Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C09
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   0.93 
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   1.6  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    24   6.6  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    23   8.7  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    23   8.7  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 37  LFLSVHHQPSPHAQIRVLASNHKLMFRTLFYYIKI*GDT 153
           LFL + +QP    ++    S++++M   LF ++K  GDT
Sbjct: 358 LFLLLTNQPRFTDELVNFKSSNEMMMNLLFIHVKYSGDT 396


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 38  CFSRFIINRLLTRKSAFSLQIISSCFERY 124
           C +  +I R L RK+  +    SSCFE+Y
Sbjct: 544 CLACAMIQRSLERKNMSTPSQCSSCFEQY 572


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 165 KMNRAINIFKKKHLTSKPSFP 227
           K ++  +  KK+H   KPSFP
Sbjct: 131 KYSKKSSTRKKEHFNKKPSFP 151


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +2

Query: 53  IINRLLTRKSAFSLQIISSCFERYS 127
           ++N LL   S+ +L+++S+C + ++
Sbjct: 94  VVNMLLVASSSKNLEVLSACVDCFA 118


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 266  SKMLEH*CSMFSQWKRRFTSKML 198
            S +LEH  S FS+W  +  S+ L
Sbjct: 1212 SNVLEHVASSFSKWHSKVFSRNL 1234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,006
Number of Sequences: 5004
Number of extensions: 17736
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)