Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C09
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical ...    26   5.3  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    26   5.3  
AF098987-6|AAK70643.1|   37|Caenorhabditis elegans Hypothetical ...    25   9.2  
AC024214-9|AAF36079.1|  790|Caenorhabditis elegans Calpain famil...    25   9.2  

>AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical
           protein F54D12.5 protein.
          Length = 299

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 132 YKNIRGYILTGKMNRAINI--FKKKHLTSKPSFPLTKH 239
           Y N+R  I T K+ R I++      H T++PS PL +H
Sbjct: 165 YANLRD-IQTDKIMRGIDVETLTNLHTTTEPSPPLPRH 201


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
           protein R193.2 protein.
          Length = 1853

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 120 VILLYKNIRGYILTGKMNRAINIFKKKHLTSKP 218
           V  + KN+  + ++G++NR I  F+K+ + S P
Sbjct: 246 VFFVGKNLELFKISGELNRFIKTFEKQKIFSCP 278


>AF098987-6|AAK70643.1|   37|Caenorhabditis elegans Hypothetical
           protein F40H3.6 protein.
          Length = 37

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 230 D*TCCINALASWKRLYDNSNYFXLL 304
           D T C   +  WK+   N NYF L+
Sbjct: 7   DGTWCGGGVVGWKKSNSNYNYFLLI 31


>AC024214-9|AAF36079.1|  790|Caenorhabditis elegans Calpain family
           protein 6 protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 174 YSFCQLKCIPLYFY 133
           +S+  LKC PLYFY
Sbjct: 132 HSYVPLKCQPLYFY 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,022,928
Number of Sequences: 27780
Number of extensions: 95200
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)