Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C08
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.5  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.3  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/21 (33%), Positives = 8/21 (38%)
 Frame = +1

Query: 91  CXSNNSFVTXRVDWTTSSRAC 153
           C   N F      WT+S   C
Sbjct: 673 CFYENKFYRQEAQWTSSDNPC 693


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = +1

Query: 37  RPSLPNIQS-LRVXY*KLKCXSNNSFVTXRVDWTTSSRACLHLLARSASWPLP 192
           R + PN  +   V     KC +         D  TS   C  L +  A WP P
Sbjct: 29  RTNFPNFYNDFEVQRYTWKCENQKCVKYLVEDEETSLATCNMLCSEPAIWPKP 81


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 516 NHVQGRRWFALYR 554
           N + GRRW AL R
Sbjct: 510 NQILGRRWHALGR 522


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 516 NHVQGRRWFALYR 554
           N + GRRW AL R
Sbjct: 402 NQILGRRWHALGR 414


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,175
Number of Sequences: 336
Number of extensions: 2356
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)