Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C08
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1540 - 27570605-27571375,27571474-27572748,27572769-275729...    30   2.0  
06_03_1105 - 27634787-27636025                                         30   2.0  
11_06_0264 - 21785450-21786928                                         29   3.5  
01_03_0311 + 14905995-14906393,14906982-14907009,14907893-149079...    29   3.5  
06_01_0900 + 6926600-6927202                                           24   5.9  
02_02_0419 - 10009686-10012568                                         28   8.1  

>07_03_1540 -
           27570605-27571375,27571474-27572748,27572769-27572921,
           27572923-27573159
          Length = 811

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -2

Query: 695 KLLINDQELGTXTLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPSPAL 525
           KL++ D ELG+  L + E + +  G   P G+P   + +L    S+HA+  +  P +
Sbjct: 405 KLIVADNELGSLKLAL-EGSYVEPG---PGGDPIHNLKVLPTGKSIHALDPQTMPTI 457


>06_03_1105 - 27634787-27636025
          Length = 412

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = -3

Query: 352 DKNCIRIRLMRSRMMTHTWTERSLMKGRRSLKMLRRARPTPLPRC 218
           D N  RIRL+RS     T +  S   GR   +  RR  P P PRC
Sbjct: 262 DPNPPRIRLVRSSHRHSTSSSSSSRAGRSPAR--RRPSPPPPPRC 304


>11_06_0264 - 21785450-21786928
          Length = 492

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 626 GGGVSPSGNPAPTINLLYPSISLHAIQREPSPALYMVL 513
           GGG + S +P+P    +  S S H     P P  Y+ +
Sbjct: 299 GGGAASSSSPSPVARTVLSSPSPHQYSSGPKPTQYLAV 336


>01_03_0311 +
           14905995-14906393,14906982-14907009,14907893-14907930,
           14908741-14908878,14909180-14909356,14909497-14909550,
           14909713-14909813,14910445-14910739
          Length = 409

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/45 (40%), Positives = 19/45 (42%)
 Frame = -3

Query: 301 TWTERSLMKGRRSLKMLRRARPTPLPRCDA*GSAPRPVTATTRTW 167
           TWT        R L  + R RP    R        RPV ATTRTW
Sbjct: 29  TWTRPVTTARLRPLAAVTRTRPVTAARS-------RPVAATTRTW 66


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 23.8 bits (49), Expect(2) = 5.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 296 PCMGHHPRPHQPDP 337
           P + HHP P QP P
Sbjct: 175 PPLFHHPPPQQPHP 188



 Score = 23.0 bits (47), Expect(2) = 5.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 311 HPRPHQPDPDA 343
           HP PH P P A
Sbjct: 187 HPHPHPPSPSA 197


>02_02_0419 - 10009686-10012568
          Length = 960

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -2

Query: 656 LYITENNVIWGGGVSPSGNP---APTINLLYPSISLHAIQREPSPALYMVLNYELRLPEL 486
           L +++NN+I G GVSPS  P       +L Y ++S   +  E  P L  +    LR  +L
Sbjct: 118 LDLSQNNLIGGDGVSPSPLPRFLGSLCDLRYLNLSFTGLAGEIPPQLGNLT--RLRQLDL 175

Query: 485 SQQAG 471
           S   G
Sbjct: 176 SSNVG 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,610,866
Number of Sequences: 37544
Number of extensions: 294467
Number of successful extensions: 875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)