Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C08
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68270-12|CAA92573.1|  205|Caenorhabditis elegans Hypothetical p...    48   8e-06
Z68213-6|CAA92442.1|  205|Caenorhabditis elegans Hypothetical pr...    48   8e-06
AF202931-1|AAK69381.1|  205|Caenorhabditis elegans ICln1 protein.      48   8e-06
Z68270-13|CAD21675.1|  225|Caenorhabditis elegans Hypothetical p...    38   0.005
Z68213-7|CAD21589.1|  225|Caenorhabditis elegans Hypothetical pr...    38   0.005
AF202932-1|AAK69382.1|  225|Caenorhabditis elegans ICln2 protein.      38   0.005
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    31   0.60 
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z68270-12|CAA92573.1|  205|Caenorhabditis elegans Hypothetical
           protein C01F6.8a protein.
          Length = 205

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
 Frame = -2

Query: 671 LGTXTLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPS--PALYMVLNYELR 498
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  + S  P+ ++ +  + R
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVSVFPSEHIFVMVDQR 84

Query: 497 LPELSQQAGSTXXXXXXXXXXXDQPITQLRFIPENENELQAMYSAMCQGQE 345
              L   A               +P  ++RF+P++++ L  +Y  +  GQE
Sbjct: 85  KSGLELAAAELEDEESDDDEE--EPALEIRFVPDDKDSLSQIYHQIAVGQE 133


>Z68213-6|CAA92442.1|  205|Caenorhabditis elegans Hypothetical
           protein C01F6.8a protein.
          Length = 205

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
 Frame = -2

Query: 671 LGTXTLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPS--PALYMVLNYELR 498
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  + S  P+ ++ +  + R
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVSVFPSEHIFVMVDQR 84

Query: 497 LPELSQQAGSTXXXXXXXXXXXDQPITQLRFIPENENELQAMYSAMCQGQE 345
              L   A               +P  ++RF+P++++ L  +Y  +  GQE
Sbjct: 85  KSGLELAAAELEDEESDDDEE--EPALEIRFVPDDKDSLSQIYHQIAVGQE 133


>AF202931-1|AAK69381.1|  205|Caenorhabditis elegans ICln1 protein.
          Length = 205

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
 Frame = -2

Query: 671 LGTXTLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPS--PALYMVLNYELR 498
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  + S  P+ ++ +  + R
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVSVFPSEHIFVMVDQR 84

Query: 497 LPELSQQAGSTXXXXXXXXXXXDQPITQLRFIPENENELQAMYSAMCQGQE 345
              L   A               +P  ++RF+P++++ L  +Y  +  GQE
Sbjct: 85  KSGLELAAAELEDEESDDDEE--EPALEIRFVPDDKDSLSQIYHQIAVGQE 133


>Z68270-13|CAD21675.1|  225|Caenorhabditis elegans Hypothetical
           protein C01F6.8b protein.
          Length = 225

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 20/129 (15%)
 Frame = -2

Query: 671 LGTXTLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQRE----PSPALYMVLNYE 504
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  +    PS  ++++++  
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVSVFPSEHIFVMVDQR 84

Query: 503 -----------LR-LPELSQQAG----STXXXXXXXXXXXDQPITQLRFIPENENELQAM 372
                      LR + E  +Q G    +            ++P  ++RF+P++++ L  +
Sbjct: 85  KSVRRRRRAPVLRTIQEDDEQRGLELAAAELEDEESDDDEEEPALEIRFVPDDKDSLSQI 144

Query: 371 YSAMCQGQE 345
           Y  +  GQE
Sbjct: 145 YHQIAVGQE 153


>Z68213-7|CAD21589.1|  225|Caenorhabditis elegans Hypothetical
           protein C01F6.8b protein.
          Length = 225

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 20/129 (15%)
 Frame = -2

Query: 671 LGTXTLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQRE----PSPALYMVLNYE 504
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  +    PS  ++++++  
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVSVFPSEHIFVMVDQR 84

Query: 503 -----------LR-LPELSQQAG----STXXXXXXXXXXXDQPITQLRFIPENENELQAM 372
                      LR + E  +Q G    +            ++P  ++RF+P++++ L  +
Sbjct: 85  KSVRRRRRAPVLRTIQEDDEQRGLELAAAELEDEESDDDEEEPALEIRFVPDDKDSLSQI 144

Query: 371 YSAMCQGQE 345
           Y  +  GQE
Sbjct: 145 YHQIAVGQE 153


>AF202932-1|AAK69382.1|  225|Caenorhabditis elegans ICln2 protein.
          Length = 225

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 20/129 (15%)
 Frame = -2

Query: 671 LGTXTLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQRE----PSPALYMVLNYE 504
           LG  TLYIT++ VIW    S +G      ++ YP+I LHAI  +    PS  ++++++  
Sbjct: 29  LGNGTLYITDSAVIWIS--SAAGTKG--FSVAYPAIVLHAISTDVSVFPSEHIFVMVDQR 84

Query: 503 -----------LR-LPELSQQAG----STXXXXXXXXXXXDQPITQLRFIPENENELQAM 372
                      LR + E  +Q G    +            ++P  ++RF+P++++ L  +
Sbjct: 85  KSVRRRRRAPVLRTIQEDDEQRGLELAAAELEDEESDDDEEEPALEIRFVPDDKDSLSQI 144

Query: 371 YSAMCQGQE 345
           Y  +  GQE
Sbjct: 145 YHQIAVGQE 153


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 343 CIRIRLMRSRMMTHTWTERSLMKGRRSLKMLRRARPTPLPRCDA*GSAP 197
           C++ R M S +  + WTE +  + + S   L+  RP PLPR  +  + P
Sbjct: 573 CVKQRKMIS-VEGYQWTENTADESQSSQSQLQPVRPQPLPRTSSKSTIP 620


>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
           protein C10C6.6 protein.
          Length = 1178

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 521 CTRQEMVRVVSHVEICLDRVD*WSELDCLM 610
           C++QE VR+ SHV +   + + W EL  LM
Sbjct: 81  CSKQEDVRIASHVCVIPTQNNGWPELVKLM 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,288,115
Number of Sequences: 27780
Number of extensions: 224335
Number of successful extensions: 567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)