Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C05
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.93 
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.9  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   3.8  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   8.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   8.7  

>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 165 LQKKIQNVNKVSIFILKLLKFCQLGFFGH*SYLHLNVIPKFCGPVFTNCI 16
           LQ +++N+     ++ KL + C+L   G+ S     ++   C  V TNC+
Sbjct: 158 LQGQLENME--GFWLQKLSQTCRLALTGNISEAKAFIVEIMCAGVVTNCV 205


>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 341 ILIYQIFFRHSSFNIKKIVSEYNFSTRHYKN 433
           I++ +  FRH +++   I S Y F   HY++
Sbjct: 29  IMLERNVFRHLNYSTNSICSHYQFFGGHYES 59


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 167 WYNNIPYISIATLIQIFQKIGQNIN 241
           W+NN   I+  TL Q  + +GQ +N
Sbjct: 79  WFNNTRVIAQPTLTQFREAMGQKLN 103


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 191 SIATLIQIFQKIGQNINISNTNKL 262
           ++  L+++  K   N N+SNT+KL
Sbjct: 658 NVGKLVELINKAFWNTNLSNTDKL 681


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +2

Query: 254  NKLIDFVFNLIRNL*T*ILFLIV*KYITYILIYQIFFRHSSFNIKKI 394
            N+ +D   N+   +    LF+ +   +  I +  +FF  ++F++K+I
Sbjct: 1068 NRRLDNKLNIFERINHNFLFIAIFVIVAGIQVIIVFFGGAAFSVKRI 1114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,235
Number of Sequences: 5004
Number of extensions: 38435
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)