Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C05
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80027-7|AAC48119.2|  312|Caenorhabditis elegans Serpentine rece...    28   3.4  
AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine r...    27   7.9  

>U80027-7|AAC48119.2|  312|Caenorhabditis elegans Serpentine
           receptor, class t protein63 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 201 VAIDMYGMLLYQLQKKIQNVNKVSIFILKLLKFCQL 94
           +   +YG+L+Y L  + +    +S  +L LL +C +
Sbjct: 29  IVFPVYGLLIYALNSESELKENISYKLLNLLNYCDV 64


>AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 56 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 350 YQIFFRHSSFNIKKIVSEYNFSTRHYKNILIYSLCTDILTN 472
           +Q+F+   SF I  ++  +  S +HY N     +  D+LTN
Sbjct: 30  FQLFYGVPSFIIMSVLFLHLGSRKHYTNSFYRLVQVDLLTN 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,586,767
Number of Sequences: 27780
Number of extensions: 200847
Number of successful extensions: 455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)