Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C05
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   0.79 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 217 KNLNQGGY*YVWNVIIPITKKNSKC 143
           +NLN G   Y++N   P+    SKC
Sbjct: 46  QNLNLGEIYYIYNPRYPLPYSGSKC 70


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 230 DQSFEKFESRWLLICMECYY 171
           DQ  E+FE   + I  +CYY
Sbjct: 306 DQLSERFEQLRIKILGDCYY 325


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 335 TYILIYQIFFRHSSFNIKKIVSEYNFSTRHYKN 433
           TYI+   +  RH    + +++S YN   R   N
Sbjct: 43  TYIIYESLCGRHEKRLLNELLSSYNTLERPVAN 75


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 335 TYILIYQIFFRHSSFNIKKIVSEYNFSTRHYKN 433
           TYI+   +  RH    + +++S YN   R   N
Sbjct: 43  TYIIYESLCGRHEKRLLNELLSSYNTLERPVAN 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,691
Number of Sequences: 438
Number of extensions: 2719
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)