Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C04
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    24   1.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.4  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    24   1.4  

>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 20  CSXQYTQIAASRRHLSVSSTPKSGLKGRSIKVCSLK 127
           C  Q+ Q+A  RRHL V     +G +    + CS+K
Sbjct: 43  CDRQFVQVANLRRHLRV----HTGERPYGCEHCSMK 74


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 20  CSXQYTQIAASRRHLSVSSTPKSGLKGRSIKVCSLK 127
           C  Q+ Q+A  RRHL V     +G +    + CS+K
Sbjct: 196 CDRQFVQVANLRRHLRV----HTGERPYGCEHCSMK 227


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -2

Query: 429 ILVLLFNSILSYELS--IALNR*RF 361
           +LV++FNS LSY+ S  + + R RF
Sbjct: 168 LLVMIFNSALSYKASEIVVMLRSRF 192



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 453 IEPTEIFSDCSFQCTRCNSDSNGL 524
           ++  +IF   +F CTR N  S+ L
Sbjct: 18  LQHNQIFGFVTFTCTRSNFRSSKL 41


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -2

Query: 429 ILVLLFNSILSYELS--IALNR*RF 361
           +LV++FNS LSY+ S  + + R RF
Sbjct: 186 LLVMIFNSALSYKASEIVVMLRSRF 210



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 453 IEPTEIFSDCSFQCTRCNSDSNGL 524
           ++  +IF   +F CTR N  S+ L
Sbjct: 36  LQHNQIFGFVTFTCTRSNFRSSKL 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,396
Number of Sequences: 336
Number of extensions: 3403
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)