Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C04
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   1.9  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    27   2.6  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   7.8  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = +2

Query: 275 LNLYITL*IKLCFYMYPQTHLDLFVLQGKKRYLF 376
           LNL I    KLC Y+Y   HLD  V   K  YLF
Sbjct: 183 LNLTIEA-SKLCIYLYEARHLDQ-VWDEKSTYLF 214


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 19  LLXTIHANCSFQASSFSLFNSKVWSQRSVH 108
           LL  +H+  S Q +S   + SK+ S +S+H
Sbjct: 296 LLNLVHSQISLQGTSSDNYQSKIRSAQSIH 325


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 266 CLSVGCNYTILNVGIFKTKHYQC*LSINSICY-ESYTIFDG 147
           C++V     +   GI +   YQC   ++S+C+ E   ++ G
Sbjct: 501 CVAVAGGLILFFEGITEVGRYQCDTEVSSLCFTEENVVYVG 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,743
Number of Sequences: 5004
Number of extensions: 52594
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)