Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C04
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.52 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.7  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   4.8  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +2

Query: 14  HC--CSXQYTQIAASRRHLSV 70
           HC  C  Q+ Q+A  RRHL V
Sbjct: 39  HCSHCDRQFVQVANLRRHLRV 59


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 9   KYIVAQXNTRKLQLPGVIFQSLQLQSL 89
           K +  Q +  +LQ+PGV F+S+ +  L
Sbjct: 435 KKLQPQYSQSELQMPGVKFESVNIDKL 461


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 9   KYIVAQXNTRKLQLPGVIFQSLQLQSL 89
           K +  Q +  +LQ+PGV F+S+ +  L
Sbjct: 435 KKLQPQYSQSELQMPGVKFESVNIDKL 461


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 265 QLMTEFIHYTVNKTLFLYVSSNTFRPIC 348
           +L+T+ I  T     FLY S N    +C
Sbjct: 65  KLVTDCIFVTSEPGYFLYTSKNDNEEVC 92


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 20  CSXQYTQIAASRRHLSVSSTPKSGLKGRSIKVCSLKN 130
           C+ +Y    +   H S+     SG+  R +K  ++KN
Sbjct: 41  CNRRYRTKNSLTTHKSLQHRGSSGMLKRLLKTTAIKN 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,316
Number of Sequences: 438
Number of extensions: 3525
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)