Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C03
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    33   0.054
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    32   0.071
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    29   0.66 
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.5  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    26   6.1  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.1  

>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 490 WNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEE 344
           W  KK S  NL E G  S   K   +PN +     RA    +++D DEE
Sbjct: 222 WFMKKESEENLAEAGSASPMYKLKTVPNARPVTGPRASGSDDELDYDEE 270


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 32.3 bits (70), Expect = 0.071
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 361 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRK 260
           ID +E VET+   P KKE  +K EK+ +  +K++
Sbjct: 445 IDVEETVETISEKPSKKEKKDKKEKKKEKSKKKR 478


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 247 KGQVEFITYLLDKYGNDYKAMERDKKNYYQETWKQLRSKIKTFMGIPAQV 98
           K   +F+ Y+ +   ND KAM  ++KNY+ +  K L S+ + F+   A +
Sbjct: 365 KPSFDFLKYITEST-NDIKAMTGEQKNYFLQIKKFLSSR-EPFIDFSANI 412


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -3

Query: 433 PNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAK 278
           P   +K  +     +++    V ++DS+E+ E+     P++E  + +EK  K
Sbjct: 36  PATVLKYLHEDSIYVEQPMNTVEEVDSEEDEESAPAYYPEREAIQLIEKAIK 87


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 538 NKKVPGNVQCS-IVKEAWNNKKTSARNLREMGLVSDPN 428
           NKK    +  + ++++ W+   T  +N   +GL++ PN
Sbjct: 23  NKKAKAKIYGNFVIQQNWDKHATLRQNYARLGLLATPN 60


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 186 WKETKRIIIRKLGNNCDLK*KHSWVY 109
           WK+    II ++  NC L  + SW++
Sbjct: 698 WKQANMSIITQIYLNCSLDLRDSWMF 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,622
Number of Sequences: 5004
Number of extensions: 44651
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)