Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_C03
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190... 33 0.17
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 31 0.69
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 30 1.6
05_04_0047 - 17487012-17487125,17487246-17487367,17488634-17488985 30 1.6
12_02_0927 + 24473634-24474236,24474464-24474518,24474579-24474952 30 2.1
06_03_0428 + 20692616-20692629,20692895-20693717 30 2.1
01_05_0031 + 17355791-17355920,17356341-17356675,17356762-17357109 30 2.1
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593 29 2.8
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 29 2.8
10_08_0332 - 16843295-16843356,16843884-16846656 29 4.8
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 29 4.8
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 28 8.5
04_04_0145 + 23103397-23104308 28 8.5
>11_03_0184 +
11317787-11318198,11318337-11318671,11318756-11319048,
11319125-11319483,11319549-11319748,11319823-11320012,
11320084-11320188,11320262-11320338,11320428-11320649
Length = 730
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 355 SDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQV 236
SD+E + R P +E +KL KQA PRK+ F P ++
Sbjct: 304 SDDEADDTTRKPGDRETTKKLPKQA-TPRKKTFSRPAPKI 342
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = -3
Query: 340 ETVVRLPPKKEV-AEKLEKQAKAPRKRKFMLPKGQVEFITYLLDKYGNDYKAMERDKKNY 164
+ + +L K E K+++ K + ++P+ + E I L +K+ + K +E+ K+N
Sbjct: 408 QKIKKLEDKTEKDTSKIDESTKEVEESSSLIPQLEEE-IPKLQEKFNEEEKVLEQIKENS 466
Query: 163 YQETWKQLRSKI 128
+ET ++LRSK+
Sbjct: 467 REET-ERLRSKL 477
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 373 MVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKA 275
+V Q DS++E E + R+ KK + K EK AKA
Sbjct: 521 VVEQSDSEDEREQLTRIAKKKADSGKKEKSAKA 553
>05_04_0047 - 17487012-17487125,17487246-17487367,17488634-17488985
Length = 195
Score = 30.3 bits (65), Expect = 1.6
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Frame = -3
Query: 493 AWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSD----EEVETVVR 326
+W+ + + +N G+V++PN +Q A ID+ +E E V
Sbjct: 51 SWDAEGSVVKNYAAFGVVANPNLLGAHARGTPRLVQSAPLQAPDIDAARAPVDEFEPVDS 110
Query: 325 LPPKK--EVAEKLEKQAKAPRKRKFM-LPKGQVEFITYLLDKYGNDYKAMERDKK 170
+ ++ L KQ + + L K Q +I L++K+G+DYKAM D K
Sbjct: 111 GSDLESDDLKSALGKQRRDGKSAPLEPLTKVQRIYIGRLIEKHGDDYKAMFMDIK 165
>12_02_0927 + 24473634-24474236,24474464-24474518,24474579-24474952
Length = 343
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 355 SDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLP 248
SD+E + R P +E +KL KQA PRK+ P
Sbjct: 283 SDDEADDTTRRPGDRETTKKLPKQA-TPRKKTSSRP 317
>06_03_0428 + 20692616-20692629,20692895-20693717
Length = 278
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -3
Query: 433 PNKTIKIPNFKQTQIQRAKQMVNQIDSD---EEVETVVRLPPKKEV 305
P + P ++ RA +V Q+D D EE+E +V LPP E+
Sbjct: 161 PPPPLMPPQASPSEAARAHALVAQVDQDDDDEELEEIVELPPIDEL 206
>01_05_0031 + 17355791-17355920,17356341-17356675,17356762-17357109
Length = 270
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 355 SDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 263
SD+E + R P +E +KL KQA PRK+
Sbjct: 210 SDDEADDTTRRPEDRETTKKLPKQA-TPRKK 239
>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
Length = 1278
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 307 LPSLVEVLQLFPLLHLNRSGLPFVSPFEFESV*NLVFL*FCLDHLQDPFPLDF 465
+P ++ LQ+ L + SGL P + ++ NL+F L+ L P +F
Sbjct: 301 IPPVLGQLQMLQRLDIKNSGLSSTLPSQLGNLKNLIFFELSLNQLSGGLPPEF 353
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/82 (24%), Positives = 40/82 (48%)
Frame = -3
Query: 376 QMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVEFITYLLDKYGND 197
Q +N+I E+E V + +KE AEKL K+ + K + E ++ + D
Sbjct: 565 QAINEIRRKYELEKVEIINIEKEKAEKLIKEMENKCNEKISENRQDSESSFEMVARIQQD 624
Query: 196 YKAMERDKKNYYQETWKQLRSK 131
+ E + Y++E ++++S+
Sbjct: 625 NEHKESTLRAYHKEELQRIQSQ 646
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 307 LPSLVEVLQLFPLLHLNRSGLPFVSPFEFESV*NLVFL*FCLDHLQDPFPLDF 465
+P ++ LQ+ L + SGL P + ++ NL+F L+ L P +F
Sbjct: 307 IPPVLGRLQMLQRLDIKNSGLVSTLPSQLGNLKNLIFFELSLNRLSGGLPPEF 359
>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 28.7 bits (61), Expect = 4.8
Identities = 26/88 (29%), Positives = 45/88 (51%)
Frame = -3
Query: 538 NKKVPGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQI 359
NKK P N CS +K +++K + + G+ DP I ++K I++ ++ QI
Sbjct: 1237 NKKAPENPYCSNIKNEGSSQKPTYKECLTKGV--DPLDGEYI-DWK--IIEKFEEASPQI 1291
Query: 358 DSDEEVETVVRLPPKKEVAEKLEKQAKA 275
+ + E + L KKE+ +K E+ KA
Sbjct: 1292 KKELKEEILKEL--KKEMNDKFEEMKKA 1317
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 460 LREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPK 314
+ E G+ DPNK KI +FK ++ Q + I + EV V +P K
Sbjct: 311 VHERGVEIDPNKIEKIRDFKAPTCKKEVQKLLNIAYEGEVFLVEVIPWK 359
>04_04_0145 + 23103397-23104308
Length = 303
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/75 (20%), Positives = 36/75 (48%)
Frame = -3
Query: 355 SDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVEFITYLLDKYGNDYKAMERD 176
+DE + + L +K + E+ +Q + ++K M + Q+E + +++ ++G E
Sbjct: 228 ADEAMAKIACLRNEKALVEREARQFREMAQQKQMYDRQQIESLQWVIQRFGMPCGEAEVS 287
Query: 175 KKNYYQETWKQLRSK 131
+ ET + R +
Sbjct: 288 SERAVSETSEDDRDR 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,534,106
Number of Sequences: 37544
Number of extensions: 253005
Number of successful extensions: 699
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -