Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B22
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    45   4e-06
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    24   8.4  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 45.2 bits (102), Expect = 4e-06
 Identities = 41/138 (29%), Positives = 54/138 (39%), Gaps = 6/138 (4%)
 Frame = -3

Query: 417 NFLGLFPYIXTRTRHXXXXXXXXXXXXXXXXLYG*IKNTNHIFIHIIPQGTPYILIPFXX 238
           N L L PY    T                  + G  ++   +F   +P GTP  LIP   
Sbjct: 108 NLLRLIPYGYATTAQLIFTLGLSISILIGATILGLQQHKAKVFGLFLPSGTPTPLIPLLV 167

Query: 237 XXXXXXXXIRPGTLAVRLTANIIAGHLLITLL-----RRTGTN-ISFYXXXXXXXXXXXX 76
                    R  +L +RL ANIIAGHL +++L        G N I+F             
Sbjct: 168 LIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMGLNLITFIIGFLPITVLVAI 227

Query: 75  XXLESAVAIIQSYVITIL 22
             LE  +A IQ+YV  IL
Sbjct: 228 SLLEFGIAFIQAYVFAIL 245


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 232 NNYYKWY*NIGCSLWNYMNKYVI 300
           N++Y W+       WNY N +++
Sbjct: 360 NSFYDWHNGATQVKWNYKNPHIL 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,061,892
Number of Sequences: 5004
Number of extensions: 14625
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)