Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B19
         (617 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I342 Cluster: Putative uncharacterized protein PFI053...    33   5.5  
UniRef50_Q8D3H7 Cluster: Carbamoyl-phosphate synthase small chai...    33   7.2  

>UniRef50_Q8I342 Cluster: Putative uncharacterized protein PFI0535w;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           PFI0535w - Plasmodium falciparum (isolate 3D7)
          Length = 227

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 248 NYKFIGTSDYMFTNNSTSSHIKAKLIFQNHNFTSISLNNI 367
           NYK + T ++++  N     +K  LI+QNHN  + SL N+
Sbjct: 40  NYKNVITQNFIYAVNIVIIILKEILIYQNHNSLNNSLKNV 79


>UniRef50_Q8D3H7 Cluster: Carbamoyl-phosphate synthase small chain;
           n=2; Enterobacteriaceae|Rep: Carbamoyl-phosphate
           synthase small chain - Wigglesworthia glossinidia
           brevipalpis
          Length = 376

 Score = 32.7 bits (71), Expect = 7.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 230 NILFKYNYKFIGTSDYMFTNNSTSS-HIKAKLIFQNHNFTSISLNNIDFCR 379
           N +  + Y  IG       NN +S   +KA +++Q HN  S   N + F R
Sbjct: 54  NQIVAFTYPHIGNIGIEINNNESSKIQVKAVILYQTHNIISDFRNKLSFSR 104


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,519,886
Number of Sequences: 1657284
Number of extensions: 7788635
Number of successful extensions: 14407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14400
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)