Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B18
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0533 + 18391167-18391363,18392452-18392689                       32   0.31 
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     27   8.7  
06_01_0734 + 5419951-5420475                                           27   8.7  

>09_04_0533 + 18391167-18391363,18392452-18392689
          Length = 144

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 429 CNLISISLILRRPFFKLLLQRQNXXXXXXXXXXXXXXFVHAF*LSTQTKFVK 274
           C+L+++ +   RP F+LLLQ QN              F H+F  S+++  VK
Sbjct: 88  CSLLNVQITFLRPRFRLLLQMQNEHFGYKAVQKFILKFAHSFATSSESVDVK 139


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 563 KNSVGSGLALPLALLKSMGDGNHSPSGGPYARL 465
           ++  GS LA  L LL  M      PSG  YARL
Sbjct: 60  QHHAGSDLASSLRLLADMQAAGLRPSGAAYARL 92


>06_01_0734 + 5419951-5420475
          Length = 174

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 563 KNSVGSGLALPLALLKSMGDGNHSPSG 483
           +   G GL   LA L  MGDG  SP G
Sbjct: 104 RRGAGGGLMYLLAQLMGMGDGGGSPYG 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,377,918
Number of Sequences: 37544
Number of extensions: 205193
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)