Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B18
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99266-1|CAB16464.1|  292|Caenorhabditis elegans F15C11.2 protein.     28   4.4  
Z98262-3|CAD44156.1|  454|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z98262-1|CAB10932.1|  502|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z71260-4|CAD44116.1|  454|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z71260-2|CAA95799.1|  502|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z99266-1|CAB16464.1|  292|Caenorhabditis elegans F15C11.2 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 464 ADGHTAHLMVSGYRRPWTSAMPGAEPSRCLPNSS 565
           ADGHT HL++    RP T A   A P+     SS
Sbjct: 69  ADGHTVHLVIRNQARP-TPAPAAATPTASSAPSS 101


>Z98262-3|CAD44156.1|  454|Caenorhabditis elegans Hypothetical
           protein F15C11.2c protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 464 ADGHTAHLMVSGYRRPWTSAMPGAEPSRCLPNSS 565
           ADGHT HL++    RP T A   A P+     SS
Sbjct: 69  ADGHTVHLVIRNQARP-TPAPAAATPTASSAPSS 101


>Z98262-1|CAB10932.1|  502|Caenorhabditis elegans Hypothetical
           protein F15C11.2a protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 464 ADGHTAHLMVSGYRRPWTSAMPGAEPSRCLPNSS 565
           ADGHT HL++    RP T A   A P+     SS
Sbjct: 69  ADGHTVHLVIRNQARP-TPAPAAATPTASSAPSS 101


>Z71260-4|CAD44116.1|  454|Caenorhabditis elegans Hypothetical
           protein F15C11.2c protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 464 ADGHTAHLMVSGYRRPWTSAMPGAEPSRCLPNSS 565
           ADGHT HL++    RP T A   A P+     SS
Sbjct: 69  ADGHTVHLVIRNQARP-TPAPAAATPTASSAPSS 101


>Z71260-2|CAA95799.1|  502|Caenorhabditis elegans Hypothetical
           protein F15C11.2a protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 464 ADGHTAHLMVSGYRRPWTSAMPGAEPSRCLPNSS 565
           ADGHT HL++    RP T A   A P+     SS
Sbjct: 69  ADGHTVHLVIRNQARP-TPAPAAATPTASSAPSS 101


>Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 464 ADGHTAHLMVSGYRRPWTSAMPGAEPS 544
           ADGHT HL++    RP T A   A P+
Sbjct: 69  ADGHTVHLVIRNQARP-TPAPAAATPT 94


>Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 464 ADGHTAHLMVSGYRRPWTSAMPGAEPS 544
           ADGHT HL++    RP T A   A P+
Sbjct: 69  ADGHTVHLVIRNQARP-TPAPAAATPT 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,954,562
Number of Sequences: 27780
Number of extensions: 186487
Number of successful extensions: 533
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)