Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B17
         (579 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2YSC6 Cluster: Putative uncharacterized protein; n=4; ...    33   3.7  
UniRef50_P26967 Cluster: Adult-specific cuticular protein ACP-20...    33   3.7  
UniRef50_Q12AB3 Cluster: Pseudouridine synthase; n=7; Comamonada...    33   6.4  
UniRef50_A0GMI3 Cluster: Putative uncharacterized protein; n=1; ...    32   8.5  
UniRef50_Q01099 Cluster: Harpin hrpN; n=19; Enterobacteriaceae|R...    32   8.5  

>UniRef50_A2YSC6 Cluster: Putative uncharacterized protein; n=4;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 205

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 112 IAETVAGVGDQRSDLGGMGLG----QRLGDHRLAGGEGGSVRG 228
           +  TVA V D+R D GG+G G    +R  +   A  EGG  RG
Sbjct: 2   VTATVAAVADERGDCGGIGRGRGRRRRTREREAAAVEGGGGRG 44


>UniRef50_P26967 Cluster: Adult-specific cuticular protein ACP-20
           precursor; n=4; Tenebrionidae|Rep: Adult-specific
           cuticular protein ACP-20 precursor - Tenebrio molitor
           (Yellow mealworm)
          Length = 208

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +1

Query: 124 VAGVGDQRSDLGGMGLGQRLGDHRLAGGEGGSVRGM 231
           + GVG     LGG+GLG  LG   L GG GG  RG+
Sbjct: 157 LGGVGLGGVGLGGVGLGGGLGGVGLLGGRGGLDRGI 192


>UniRef50_Q12AB3 Cluster: Pseudouridine synthase; n=7;
           Comamonadaceae|Rep: Pseudouridine synthase - Polaromonas
           sp. (strain JS666 / ATCC BAA-500)
          Length = 544

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +1

Query: 130 GVGDQRSDLGGMGLGQRLGDHRLAGGEGGSVRG 228
           G G +RS  GG G+G   G  R  GG GG  RG
Sbjct: 498 GQGQRRSGGGGSGMGGAGGGQRRGGGGGGGNRG 530


>UniRef50_A0GMI3 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia phytofirmans PsJN|Rep: Putative
           uncharacterized protein - Burkholderia phytofirmans PsJN
          Length = 325

 Score = 32.3 bits (70), Expect = 8.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 157 GGMGLGQRLGDHRLAGGEGGSVRGMTEHW 243
           G  G G   G  R+ GG GG+VRG+ +H+
Sbjct: 155 GAGGAGAISGRRRVRGGRGGNVRGVVDHY 183


>UniRef50_Q01099 Cluster: Harpin hrpN; n=19; Enterobacteriaceae|Rep:
           Harpin hrpN - Erwinia amylovora (Fire blight bacteria)
          Length = 403

 Score = 32.3 bits (70), Expect = 8.5
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +1

Query: 130 GVGDQRSDLGGMGLGQRLGDHRLAGGEGGS 219
           GV D  S L G GL Q LG+  L GG+GG+
Sbjct: 201 GVTDALSGLMGNGLSQLLGNGGLGGGQGGN 230


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,819,781
Number of Sequences: 1657284
Number of extensions: 3901864
Number of successful extensions: 14363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14334
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39987623712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)