Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B17
         (579 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    28   0.19 
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    26   0.77 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   9.5  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   9.5  

>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 0.19
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 118 ETVAGVGDQRSDLGGMGLGQRLGDHRLAGGEGGSVRG 228
           E + G     SD  GMG       HRL+  +GGS  G
Sbjct: 114 EKLRGRHSSESDREGMGHDSHKRTHRLSDSDGGSTEG 150


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 26.2 bits (55), Expect = 0.77
 Identities = 21/68 (30%), Positives = 26/68 (38%)
 Frame = +1

Query: 130 GVGDQRSDLGGMGLGQRLGDHRLAGGEGGSVRGMTEHWSTISYWGCXXXXXXXXXXDAIG 309
           G G  RS  GG  +G        A   GG V GM    + ++  G             +G
Sbjct: 679 GGGSGRSSSGGGMIGMHSVAAGAAVAAGGGVAGMMSTGAGVNRGG---DGGCGSIGGEVG 735

Query: 310 SVGDHGGG 333
           SVG  GGG
Sbjct: 736 SVGGGGGG 743


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 164  IPPRSLLWSPTPATVSAMLTDSPTDSLTDG 75
            I P  +  SP+PAT  A    + TDS T+G
Sbjct: 936  IVPNPVQASPSPATAPAPAKTTSTDS-TNG 964


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 167  PIPPRSLLWSPTPAT 123
            PIPPRS    P+P T
Sbjct: 1108 PIPPRSRRLPPSPRT 1122


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,262
Number of Sequences: 2352
Number of extensions: 3506
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55086417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)