Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B14
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    27   2.1  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   2.1  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    26   4.9  
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    26   6.5  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   6.5  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 485 YKILLKRLNFKLCVKNSKYSIYFTMGFCDRYNLVLSFRTEANDIVDFNFLKTFL 324
           Y ++LKR   K   + + Y+I   +  CD++  V +FR   + IVD  F  + L
Sbjct: 180 YTVILKR---KFGFETAVYAIGL-LSACDKFETVNTFRLGLSKIVDEEFFSSVL 229


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +1

Query: 73  PCPHKSTILFNFXHNNITSSCVLCAHIFLNM*IRTMYYTKIIIFSIKILDYTAANISQI 249
           P P    + F+  +N + S+C+ C H  L+     +++ +     +K+LDY   N S++
Sbjct: 83  PIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCR-----LKLLDYGLLNESEM 136


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   YNNQSFCSLXALTSSSAVFFCFFSLSSQINNPLQFRT*QYHI 128
           ++NQS  +L      S ++ CF     ++N  +  +T Q+++
Sbjct: 146 WSNQSLHTLYFRNGGSPIYLCFAEYDKRLNCLVPLKTFQFYV 187


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 440 NSKYSIYFTMGFCDRYNLVLSFRTEANDIVD 348
           ++K  ++  +   D+YNL+ S   EA D+ D
Sbjct: 116 STKTRLHVDLASDDKYNLIASSEDEAKDLTD 146


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 524 YLIPEKK*VTTCQYKILLKRLNFKLCVKNSKYSIYF 417
           ++IP  K V   ++K LL+R      +KN  + I F
Sbjct: 188 HVIPASKLVVFTEHKSLLRRTGVAAIIKNISFDIPF 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,504
Number of Sequences: 5004
Number of extensions: 47537
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)