Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B08
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1EZC3 Cluster: Transcriptional regulator-like; n=1; Cl...    34   3.4  
UniRef50_Q6LF63 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  

>UniRef50_Q1EZC3 Cluster: Transcriptional regulator-like; n=1;
           Clostridium oremlandii OhILAs|Rep: Transcriptional
           regulator-like - Clostridium oremlandii OhILAs
          Length = 297

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -3

Query: 277 KYNNIMVVVIYKYTVLLNIVASMKPNINCKF--STLEPNEQILFD 149
           KY N++   I++  ++   +   KP+ NCKF  S L+ N +ILFD
Sbjct: 149 KYQNVIAKSIFREKLVFAQLKDKKPDENCKFHASDLDFNMEILFD 193


>UniRef50_Q6LF63 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 3589

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
 Frame = +2

Query: 239  IFVNNNNHDIIVLEPRHFSEVSK-LS*NLLVK*VMENDDSITLFIE---NIFGIVRFIYF 406
            +FVNNNN   I+ + ++  ++S+    N  +  +  +++ I ++ E   N   I + +  
Sbjct: 1024 LFVNNNNDGEIIFDNKNIQDISEDFIKNEKINKIYISNNCINMYEEEEKNGETITKILNE 1083

Query: 407  KL-TIKTSQLIKSNKKLKIQIETRKV 481
            KL  IKT+Q+I+   K KI+  T+ V
Sbjct: 1084 KLNNIKTNQIIEHKDKNKIEHNTKGV 1109


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,084,111
Number of Sequences: 1657284
Number of extensions: 7392867
Number of successful extensions: 16745
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16742
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)