Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B08
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.1  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   9.4  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.4  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -2

Query: 242  IYSIIKYCRFNET*Y*L*IFDVRTKRTNIVRXQNXQXXRLLKKEIFWHFGTDGLS 78
            +Y ++K     ET     IF+   ++ +I      Q  R+ + EIFW F +  LS
Sbjct: 1097 LYQLLKLANSYETST---IFEPLLRKLHIQSANIKQLFRIYRLEIFWSFVSKDLS 1148


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 89   QSQNAKKFPFSAIXXFXNFXIEQYLFVWF*RRKFT 193
            ++ N+  FP S    +     E+Y   WF RR FT
Sbjct: 3443 ETLNSSVFPESIYYDYFYKTFERYCDFWFFRRTFT 3477


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 417 IVSLK*IKRTIPNIFSINKVIESSFSITYFTSKFYDSLDTSEK 289
           +V+LK ++ T+PN+F        + ++T    KF+  LD  +K
Sbjct: 197 VVALKELEDTVPNLFRYTSAYRRNNNLTSNMWKFF--LDAPKK 237


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 399 IKRTI---PNIFSINKVIESSFSITYFTSKFYDSLDTSEKCLGSSTIISWLLLFT 244
           ++RTI   PN FS N V+E     T  T K +    TS   + + T  S L++ T
Sbjct: 30  LQRTILKRPNFFSPNPVVEKMVHPTLITWKLFSF--TSVLTVSTFTFASCLIMRT 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,505
Number of Sequences: 5004
Number of extensions: 35347
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)