Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B08
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    28   5.6  
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804...    27   9.7  

>03_06_0642 +
           35239658-35240083,35240167-35240238,35240305-35240919,
           35241253-35241435,35241604-35241663,35241733-35241936,
           35242497-35242745,35243609-35243707,35243760-35243858,
           35244463-35244480,35244668-35244862,35244981-35245073,
           35245265-35245531,35245884-35246102
          Length = 932

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 330 NK*WKMMILLLYLSRIYSELYVLFILNLQLKLHSS 434
           N+  K   LLL LS +Y+ L +L  ++L LKL SS
Sbjct: 202 NRGLKNFSLLLSLSTLYAPLLILKYMDLFLKLRSS 236


>03_05_1111 -
           30479793-30479823,30479887-30479978,30480261-30480410,
           30482229-30482354,30482563-30482628,30483134-30483214,
           30483310-30483422,30483553-30483721,30484253-30484330,
           30485489-30485752,30486239-30486379,30486548-30486759,
           30486819-30486940,30487281-30487398,30487925-30487997
          Length = 611

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 378 IFSINKVIESSFSITYFT-SKFYDSLDTSEKCLGSSTIISWLLLFTNIQYY 229
           IF +N      FSI +   S  Y  + T  + + S+  I WL +   +QYY
Sbjct: 224 IFQVNSR-NCFFSIEFVELSNVYFGVSTDTRIMSSNIPICWLYVSMQVQYY 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,697,112
Number of Sequences: 37544
Number of extensions: 167799
Number of successful extensions: 291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)