Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B08
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-4|AAK29844.2|  363|Caenorhabditis elegans Serpentine re...    29   3.8  
AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF099920-4|AAK29844.2|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein95 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 271 NNIMVVVIYKYTVLLNIVASMKPNINCKFSTLEPNEQILF 152
           ++I + VIY +   +  +   KP  NC F+T  P  +++F
Sbjct: 175 SSIPLTVIYYFRYDIVKIGDWKPMNNCTFATSYPESRVIF 214


>AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical
           protein R52.3 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 348 SFSITYFTSKFYDSLDTSEKCLGSSTIISWL 256
           S S  +++ ++ D  D  +  +GSST ISW+
Sbjct: 159 SASGKFYSVQYTDVFDNRDSSMGSSTFISWI 189


>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -1

Query: 447 LLDLMSCEVLIVSLK*IKRTIPNIFSINKVIESSF--SITYFTSKF--YDSLDTSE 292
           L+ +  C V  + LK I + I  + SIN V    F  SI +F++ F  Y S++T +
Sbjct: 216 LVPIALCTVCALKLKMITKEISTVISINSVNYYLFWISIIHFSTSFWYYFSVETKQ 271


>Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical
           protein F48F5.4 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = -1

Query: 459 IFNFLLDLMSCEVLIVSLK*IKRTIPNIFSINKVIESSFSITYFTSKFYDSL 304
           +  FL+  ++ ++L+  +  I  T  +I+  NKVI + FS++ +T  F  ++
Sbjct: 231 LLRFLIKGLNFQILLPMISYIPTT--SIYVFNKVIGAQFSLSQYTVTFLGTI 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,564,466
Number of Sequences: 27780
Number of extensions: 187208
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)