Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B06
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    26   4.0  
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    25   7.0  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   7.0  

>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 225 YLIINTFKIRKCIKYLGNNDKNKTTSLN 308
           YL + T K++    +L +ND+N+TT+ N
Sbjct: 10  YLGLTTIKVQCPCFFLFHNDENRTTTSN 37


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 471 GVLLSCFSPSISQRKVHSMKLCHQSSIKN 385
           G LL  F PSI    + +MK C+ S+  N
Sbjct: 330 GCLLDLFVPSIRTGALKAMKKCYLSAHSN 358


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 83  KMSDARDTMISENVFGLFPL 24
           KM + +DT ISEN+F  F +
Sbjct: 459 KMPELKDTEISENIFKKFDI 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,470
Number of Sequences: 5004
Number of extensions: 30657
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)