Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B02
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.95 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 212 TLSNRHADCLSPLSQMSVLYKVSFVSVTLSNTIFAKLQDYC 334
           TLS +HA   + L  +S L  V       +  +F  L +YC
Sbjct: 286 TLSTQHAKSQASLPPVSYLKAVDAFMSVCTVFVFMALMEYC 326


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 626 DNYQTNTVNQSYILFKNNHH 685
           +NY  N  N +Y  + NN++
Sbjct: 327 NNYNNNNYNNNYNNYNNNNY 346


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 81  LAIDHKNKENTAKIQRKNKTKQKSYILS 164
           + +  K K+N  +  R N T++  Y+L+
Sbjct: 351 MVVSMKIKQNVPQSGRVNNTQRNEYLLA 378


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 80  ILSKKA*CALSSVEHFAMTLYTYC 9
           +L++K   A +  +H   T+YT C
Sbjct: 835 VLTRKIPEAFNESKHIGFTMYTTC 858


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 137 FIFSLDFCSVFFIFVINCQILSKKA*CALS 48
           ++F   FC  +  F + C   S    CA+S
Sbjct: 91  WVFGPRFCDTWIAFDVMCSTASILNLCAIS 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,213
Number of Sequences: 438
Number of extensions: 3290
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)