Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_B01
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    27   2.2  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    27   3.0  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   5.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.0  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    25   9.0  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 14  FLFKIK*KXNQPLKLSYLKEINAKIIINTHEMNQHKI 124
           F F+I       LKL+  +EIN  II  THE+ Q +I
Sbjct: 58  FSFEIDSTYAHTLKLAENQEINLSIIDCTHEIEQLEI 94


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 453 IISHGLCSSGIFCLANINYERLHSRSLYINRGMIN 349
           ++S GL SSGI  L  I    +     YI  GM++
Sbjct: 105 LVSAGLISSGIMTLIQIARVHIPKTKYYIGTGMLS 139


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +2

Query: 35  KXNQPLKLSYLKEINAK--IIINTHEMN-QHKIYINLEN 142
           K N+ LKL   KEIN K  ++ ++H M+ +HK  ++ ++
Sbjct: 403 KVNRELKLEKEKEINTKRNLVTSSHSMSLRHKKAVDYQS 441


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 145  NIFKVYIDFMLVHLVSIYYYF 83
            +IFK      L HL+SIYY+F
Sbjct: 1394 DIFKSMYVLSLDHLLSIYYWF 1414


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 135 LKIFTMXEYKNININYNQH 191
           + +F   E+ N+N NYN H
Sbjct: 1   MPVFMFDEHDNLNENYNSH 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,801
Number of Sequences: 5004
Number of extensions: 25751
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)