Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A21
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0686 + 6049563-6050900                                           30   0.86 
09_06_0089 + 20781086-20782985,20783463-20783538,20783593-207836...    28   3.5  
01_06_0792 - 32031569-32033041,32033124-32033341,32033502-32033568     27   6.0  
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29...    27   8.0  

>08_01_0686 + 6049563-6050900
          Length = 445

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 303 KQRRLQNSYKIRLNKICISKLPCLLLSPLRGTGDAP 410
           ++ ++Q + + +L K+  ++ P L+ +P RGTGD P
Sbjct: 72  QRHQIQANARRKLTKLFPTRAPPLVAAPSRGTGDPP 107


>09_06_0089 +
           20781086-20782985,20783463-20783538,20783593-20783669,
           20784301-20784405,20784601-20784659
          Length = 738

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 245 KRYLNVFYPTEFSLSRFACTFNYMRISY 162
           +R  +V      SL++FACT NY+R+ +
Sbjct: 520 EREADVSREAALSLTKFACTENYLRVDH 547


>01_06_0792 - 32031569-32033041,32033124-32033341,32033502-32033568
          Length = 585

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 227 RRSNIASNIQVTSMFYNFFYTK*SLE---ATSITKFIQ 331
           RR N A N++    F+N++YT   L    A+++  +IQ
Sbjct: 160 RRDNSARNVRTLQTFFNWYYTVLGLSIVLASTVIVYIQ 197


>05_01_0042 -
           290077-290676,291093-291233,291675-291764,292364-292563,
           292685-292743,292827-292942
          Length = 401

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 221 PTEFSLSRFACTFNYMRISYIHSWKMEL 138
           PT F+   + C ++    +YIHS+K+ L
Sbjct: 253 PTSFAERPYVCPYDGCGKAYIHSYKLNL 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,932,979
Number of Sequences: 37544
Number of extensions: 139193
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)