Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A21
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   9.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 185 FNYMRISYIHS 153
           FNYM++ +IHS
Sbjct: 165 FNYMKVIFIHS 175


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 400 PVPRSGLSKRHGSLDM 353
           P P +G SK HG L++
Sbjct: 363 PSPVTGASKSHGDLEL 378


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 36  QILKQNTNFTHY*I*YYSNSNKKTLL*IIYY 128
           +I+   +N  +Y   YY+N+N K L   I Y
Sbjct: 302 KIISSLSNSCNYSNNYYNNNNYKKLYYNINY 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,616
Number of Sequences: 438
Number of extensions: 2439
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)