Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_A20
(394 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa... 74 7e-15
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc... 74 7e-15
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 0.79
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 26 2.4
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 25 5.5
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 25 5.5
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 24 7.3
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 24 7.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 24 7.3
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 24 9.7
>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 68
Score = 74.1 bits (174), Expect = 7e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = -1
Query: 295 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 149
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 3|||Manual
Length = 68
Score = 74.1 bits (174), Expect = 7e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = -1
Query: 295 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 149
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.5 bits (58), Expect = 0.79
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 222 SSSLGRPAVRSSET*KDPSVTETSSLFLNLNVKL 121
++S+ PAV SSET S+T T S + + +V +
Sbjct: 203 TTSVNSPAVSSSETLTSVSITSTESAYTSSSVDI 236
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 2.4
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 278 CRESAWPYWFSGPVYSSEGRVHWGDQPSDHQK 183
C+ + WPY+ S P +E V+ + + ++K
Sbjct: 172 CKWNCWPYYTSSPTSDAEDLVYIQNSKATNKK 203
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = -1
Query: 310 AKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSR 197
A +D+P + ++V+ + T + CT+VK+ + ++
Sbjct: 121 ALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +1
Query: 277 HEQERWVYPFWLVISSLMQ*AHVHQSWRVSKSI 375
H ++ P W+ IS A++ Q W S I
Sbjct: 76 HGDNAYLLPAWIAISCFQTAAYIVQDWITSPII 108
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 24.2 bits (50), Expect = 7.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 340 HVHQSWRVSKSIG 378
HVHQ WR+ IG
Sbjct: 234 HVHQGWRIMFGIG 246
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 24.2 bits (50), Expect = 7.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 240 WP*EPVRPSTFTTRARTLGLSILACNIE 323
WP +P + +G+SI+AC IE
Sbjct: 498 WPGDPTFRKSNDVCIALIGVSIIACGIE 525
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.2 bits (50), Expect = 7.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 161 VTDGSFHVSDDLTAGLPNELDLHLSTLAL 247
+T+G D+++ PN DL LS+LAL
Sbjct: 435 ITEGVNPTLDEVSKFNPNNEDLDLSSLAL 463
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 23.8 bits (49), Expect = 9.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -3
Query: 281 SCRESAWPYWF 249
+C E WPYW+
Sbjct: 824 ACVEKTWPYWW 834
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,017
Number of Sequences: 5004
Number of extensions: 28406
Number of successful extensions: 75
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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