Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A19
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1063 + 10974522-10974776,10975094-10975599,10976243-109763...    31   0.90 
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...    29   3.6  
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730...    28   8.4  

>12_01_1063 +
           10974522-10974776,10975094-10975599,10976243-10976321,
           10976337-10976633,10976712-10976976,10977055-10977425
          Length = 590

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 395 ICDCTSMRHTAVFKDCPHCEIYFVHVK 315
           IC+C    HT +F  CPH    FVHV+
Sbjct: 458 ICECMQWEHTGLF--CPHLLRAFVHVQ 482


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/53 (22%), Positives = 29/53 (54%)
 Frame = -3

Query: 166 CSIS*RRLNWLSVMTIYIYNVNFPKLFISLISVIKNQ*CIEVPYYLFISVTRF 8
           CS+  +R+NW+  +   +  + F  LF  + +++K      + + +FI++ +F
Sbjct: 184 CSVQTQRMNWVEFLKPVVAMLVFDTLFALMTALVKKALADGLNHVVFITLRQF 236


>12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,
            7302885-7304042,7304133-7304291,7304397-7304504,
            7305045-7305304,7305936-7306101,7307025-7307050,
            7307318-7307402,7307486-7307695,7308815-7308872,
            7308964-7309037,7309323-7309373,7309576-7309664,
            7310027-7310104,7310164-7310269
          Length = 1140

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 453  THRYFI*MNAVVIVLFKFSYL*LYLHATH 367
            T+R+++ + A+ IVL    YL ++LH +H
Sbjct: 1053 TNRFYLALCALTIVLLPLFYLIVFLHQSH 1081


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,795
Number of Sequences: 37544
Number of extensions: 261101
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)