Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A19
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z68118-7|CAA92184.2|  573|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF187013-1|AAG35183.1|  573|Caenorhabditis elegans nicotinic ace...    28   5.7  
AF106575-12|AAC78165.1|  374|Caenorhabditis elegans Hypothetical...    28   5.7  
Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical
           protein C17E4.9 protein.
          Length = 320

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 211 NSNTGTLQTKSNKNWTRHIYIY-FFYISINKTWQNCLT 321
           N   GT+  ++ K+W + I  Y  FY  +   W  CLT
Sbjct: 35  NKKNGTVMGRTGKSWFQIIVFYIIFYAFLAAFWLTCLT 72


>Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical
           protein C54C6.4 protein.
          Length = 156

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 330 FRTCQTILPCFIYGNIKKIYVYVPSPVLVAF 238
           F T QTI P   YGNI+K+Y +V   V++ +
Sbjct: 53  FVTFQTI-PAVFYGNIRKLYGFVYEHVIIPY 82


>Z68118-7|CAA92184.2|  573|Caenorhabditis elegans Hypothetical
           protein R01E6.4 protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 333 LFRTCQTILPCFIYGNIKKIYVYVPSPVLVAFSL 232
           LF TC  ILPCF+  +I   +V+  S   + FS+
Sbjct: 265 LFFTCNLILPCFLI-SILTTFVFYLSDHKITFSI 297


>AF187013-1|AAG35183.1|  573|Caenorhabditis elegans nicotinic
           acetylcholine receptor-like subunit ACR-12 protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 333 LFRTCQTILPCFIYGNIKKIYVYVPSPVLVAFSL 232
           LF TC  ILPCF+  +I   +V+  S   + FS+
Sbjct: 265 LFFTCNLILPCFLI-SILTTFVFYLSDHKITFSI 297


>AF106575-12|AAC78165.1|  374|Caenorhabditis elegans Hypothetical
           protein K04F1.6 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = +3

Query: 477 RHFCNFTGEPF---KI*NFEKIT 536
           RHFCNFTG+     K+  FE++T
Sbjct: 219 RHFCNFTGDSISSGKVCQFEELT 241


>Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = +1

Query: 172 KTRKLHHLVI*KINSNTGT------LQTKSNKNWTRHIYIYFFYISINKTW 306
           + R+LH +   K NSN+GT      +QT++ KN T +       +++N+ +
Sbjct: 194 EARRLHQIAELKDNSNSGTSIDNAKVQTRAEKNGTNNQQHKLIEVNVNRNY 244


>Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = +1

Query: 172 KTRKLHHLVI*KINSNTGT------LQTKSNKNWTRHIYIYFFYISINKTW 306
           + R+LH +   K NSN+GT      +QT++ KN T +       +++N+ +
Sbjct: 194 EARRLHQIAELKDNSNSGTSIDNAKVQTRAEKNGTNNQQHKLIEVNVNRNY 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,427,119
Number of Sequences: 27780
Number of extensions: 286485
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)