Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_A17
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 235 3e-62
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 232 2e-61
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 230 9e-61
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 230 9e-61
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 225 4e-59
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 130 1e-30
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 128 3e-30
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 28 6.4
06_03_1221 - 28514952-28518152 28 6.4
05_02_0101 + 6611694-6611834,6612651-6612734,6613035-6613096,661... 28 6.4
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 235 bits (574), Expect = 3e-62
Identities = 114/162 (70%), Positives = 131/162 (80%)
Frame = -2
Query: 709 IVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLT 530
IVEGLM VDGPS K WR GR A NIIP+STGAAKAVGKV+PALNGKLT
Sbjct: 220 IVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLT 279
Query: 529 GMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGD 350
GMAFRVP +VSVVDLTVRL KPASY+ IK +KE +EG LKGILGY E+ +VS+DF GD
Sbjct: 280 GMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEESEGKLKGILGYVEEDLVSTDFQGD 339
Query: 349 SHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 224
+ SSIFDA AGI+LNDNFVKL+SWYDNE+GYSSRV+DLI+++
Sbjct: 340 NRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVVDLIRHM 381
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 232 bits (568), Expect = 2e-61
Identities = 115/164 (70%), Positives = 131/164 (79%)
Frame = -2
Query: 709 IVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLT 530
IVEGLM VDGPS K WR GR A NIIP+STGAAKAVGKV+PALNGKLT
Sbjct: 191 IVEGLMTTVHAITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLT 250
Query: 529 GMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGD 350
GMAFRVP +VSVVDLTVRL KPASY+ IK +KE AEG LKGILGY E+ +VS+DF GD
Sbjct: 251 GMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEEAEGKLKGILGYVEEDLVSTDFQGD 310
Query: 349 SHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQS 218
S SSIFDA AGI+L+D FVKL+SWYDNE+GYS+RVIDLI+++ S
Sbjct: 311 SRSSIFDAKAGIALSDTFVKLVSWYDNEWGYSTRVIDLIRHMHS 354
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 230 bits (562), Expect = 9e-61
Identities = 109/162 (67%), Positives = 131/162 (80%)
Frame = -2
Query: 709 IVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLT 530
I+EGLM VDGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLT
Sbjct: 195 IIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLT 254
Query: 529 GMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGD 350
GM+FRVP +VSVVDLTVR+ K ASY+AIK +K A+EG LKGI+GY E+ +VS+DF+GD
Sbjct: 255 GMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGD 314
Query: 349 SHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 224
S SSIFDA AGI+LNDNFVKL++WYDNE+GYS+RVIDLI+++
Sbjct: 315 SRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHM 356
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 230 bits (562), Expect = 9e-61
Identities = 112/162 (69%), Positives = 130/162 (80%)
Frame = -2
Query: 709 IVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLT 530
I EGLM VDGPS K WR GRGA QNIIP+STGAAKAVGKV+PALNGKLT
Sbjct: 247 IAEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPALNGKLT 306
Query: 529 GMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGD 350
GMAFRVP NVSVVDLT RL K ASYE +K +KEA+EG LKGILGYT++ VVS+DFIGD
Sbjct: 307 GMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKEASEGSLKGILGYTDEDVVSNDFIGD 366
Query: 349 SHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 224
+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 367 TRSSIFDAKAGIGLSSSFMKLVSWYDNEWGYSNRVLDLIGHM 408
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 225 bits (549), Expect = 4e-59
Identities = 108/162 (66%), Positives = 129/162 (79%)
Frame = -2
Query: 709 IVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLT 530
IVEGLM VDGPS K WR GRGA QNIIP+STGAAKAVGKV+P LNGKLT
Sbjct: 306 IVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLT 365
Query: 529 GMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGD 350
GMAFRVP NVSVVDLT R+ K ASY+ +K +K A+EG LKGILGYT++ VVS+DF+GD
Sbjct: 366 GMAFRVPTPNVSVVDLTCRIEKSASYDDVKAAIKAASEGALKGILGYTDEDVVSNDFVGD 425
Query: 349 SHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 224
+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 426 ARSSIFDAKAGIGLSSSFMKLVSWYDNEWGYSNRVLDLIAHM 467
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 130 bits (313), Expect = 1e-30
Identities = 65/138 (47%), Positives = 87/138 (63%)
Frame = -2
Query: 628 RDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYE 449
R R A NI+P STGAAKAV V+P L GKL G+A RVP NVSVVDL V++ K E
Sbjct: 263 RRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAE 322
Query: 448 AIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDN 269
+ Q +++A LKGIL + +VS DF S DA+ + + D+ VK+I+WYDN
Sbjct: 323 EVNQAFRDSAANELKGILEVCDVPLVSVDFRCSDVSCTIDASLSMVMGDDMVKVIAWYDN 382
Query: 268 EYGYSSRVIDLIKYIQSK 215
E+GYS RV+DL + ++
Sbjct: 383 EWGYSQRVVDLADIVANQ 400
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 128 bits (310), Expect = 3e-30
Identities = 66/139 (47%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Frame = -2
Query: 628 RDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPA-SY 452
R R A NI+P STGAAKAV V+P L GKL G+A RVP NVSVVDL + K +
Sbjct: 275 RRARAAALNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPNVSVVDLVINTVKTGITA 334
Query: 451 EAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYD 272
+ + ++AA GPL GIL + +VS DF SS DA+ + + D+ VK+++WYD
Sbjct: 335 DDVNAAFRKAAAGPLSGILDVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYD 394
Query: 271 NEYGYSSRVIDLIKYIQSK 215
NE+GYS RV+DL + SK
Sbjct: 395 NEWGYSQRVVDLAHLVASK 413
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 264 YSLSYQLISFTKLSFKEIPAAASKIEECESPMK 362
YSL + + TK FK+ K EEC +P K
Sbjct: 77 YSLVMKCLENTKNDFKKCKTLIDKYEECSNPPK 109
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 28.3 bits (60), Expect = 6.4
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Frame = -2
Query: 652 DGPSGKLWRDGRGAQQNIIP--ASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 479
DG +LW GRG I P A+ A + +L+G+ + F +P N +VVD++
Sbjct: 72 DGAVTRLWLPGRGLGGTISPSIANLTALTYLNLSGNSLSGRFPDLLFALP--NATVVDVS 129
Query: 478 VRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAG-ISLN 305
S E V AA +G L V S+ G S+I++ +SLN
Sbjct: 130 Y---NRLSGELPNAPVAAAAATNARGSLSLQVLDVSSNLLAGRFPSAIWEHTPRLVSLN 185
>05_02_0101 +
6611694-6611834,6612651-6612734,6613035-6613096,
6613304-6613322
Length = 101
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -2
Query: 610 QQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKV 431
QQ A+TG K V P +NG +GM + + +V + ++LG+ ++ + K +
Sbjct: 9 QQQTAAAATGVWKTVK---PFVNGGASGMLATCVIQPIDMVKVKIQLGEGSAAQVTKNML 65
Query: 430 KEAAEGPL-KGI 398
G KG+
Sbjct: 66 ANEGIGSFYKGL 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,656,674
Number of Sequences: 37544
Number of extensions: 291492
Number of successful extensions: 742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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