Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A16
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   5.3  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.0  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   9.2  

>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 251 FRYLNLVDRYPFF*SNTYLHVFTNHYHDEEIT 346
           FRY+N    +P F    ++ +F N Y D+E T
Sbjct: 187 FRYINSC--WPLFDLENFMDLFDNFYSDKEKT 216


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -2

Query: 229 INRASYPLGHDWDVFGQFIIVNIILFSNLIQVLYP*VLDAIAPPYTPEFVQLVLPMVE 56
           +N   +PL    D+F    ++N+ LF      L+  +L AI          LVL + E
Sbjct: 191 VNSPFFPLPSSDDLFLNDRVINLFLFYEKFSYLFTHLLSAIKSRDALSIPSLVLSLQE 248


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 190  HPSRGLKDKTPGLYVSRDVTLSVS*SCRQVS 282
            HPS  + +K P + +  ++ L+    CRQ++
Sbjct: 993  HPSSSVAEKKPKVIIYFELVLTTKEYCRQIT 1023


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,098
Number of Sequences: 5004
Number of extensions: 56225
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)