Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A16
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323...    30   1.8  
06_02_0356 - 15118498-15119217,15120020-15120238,15120320-15120634     27   9.5  
03_05_1013 + 29680057-29680226,29682272-29682417,29683417-296834...    27   9.5  

>09_04_0683 -
           19431034-19431495,19431632-19431997,19432055-19432326,
           19433621-19433686,19433924-19433978,19434509-19434577,
           19435200-19435307,19435394-19435462,19435883-19436038,
           19436089-19436229,19436514-19436568,19437103-19437233,
           19437382-19437486
          Length = 684

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 238 SIRINRASYPLGHDWDVFGQFII--VNIILFSNLIQVLYP*VLDAIAPPYTPEFVQLVLP 65
           S+R++     L   W+  G++     + +LF    ++ +  +  ++APP    F+ LVLP
Sbjct: 468 SVRLSEEPDSLSWRWETSGEYSSRSASRVLFFGRTRLQHKLIWQSLAPPRCRYFLWLVLP 527

Query: 64  MVENE 50
              NE
Sbjct: 528 PFHNE 532


>06_02_0356 - 15118498-15119217,15120020-15120238,15120320-15120634
          Length = 417

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 283 WIPVYKIKIPKESHLSIRINRASYPLGHDWDVFGQ 179
           W P  + KIPKE +    +N   YP+     V G+
Sbjct: 12  WNPRTQNKIPKEVYTITEVNEVGYPMAPTKAVLGR 46


>03_05_1013 +
           29680057-29680226,29682272-29682417,29683417-29683493,
           29683577-29683699,29683781-29683849,29684824-29684925,
           29684998-29685078,29685161-29685313,29685442-29685513,
           29685773-29685936,29686046-29686091,29686268-29686337,
           29686509-29686594
          Length = 452

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = -3

Query: 549 VKWLADPRNINNVNAATHPESGVQFQFLQYNGCLTLQI*THYSFTKETGIVVIPIPI 379
           + WL      +   A       + F    YNG L   +   YS+TK   I+ +  P+
Sbjct: 86  ILWLTGGPLCSGFTALVFEVGPMNFVLAPYNGSLPRLVNNQYSWTKIASIIFLDTPV 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,778,881
Number of Sequences: 37544
Number of extensions: 343846
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)