Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A16
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF063007-6|AAC16427.2|  523|Caenorhabditis elegans Taf (tbp-asso...    29   2.8  
Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical p...    29   3.7  
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    29   3.7  
DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like...    29   3.7  
Z81104-9|CAB70252.3|  488|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -1

Query: 296 LIRKMDTCLQD*DTERVTSLDTYKPGVLSFRPRLGCVWSVHHCEYNFIFKLNSSLISIGF 117
           L  K+   L   D     S  T+K G+LS +     V S  H  +N+   + SSL+ +  
Sbjct: 301 LCEKLSNKLVGKDRHNDESTFTFKMGILSVKALARIVVSAPH--FNYSTNIVSSLVRLSL 358

Query: 116 GRNSTAV 96
            +N T +
Sbjct: 359 AKNETVI 365


>AF063007-6|AAC16427.2|  523|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 4
           protein.
          Length = 523

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 121 VLDAIAPPYTPEFVQLVLPMVENEEITGTMRAEGENEP 8
           VL + A P+   F+Q  LP + N    GT   EG N P
Sbjct: 156 VLKSQAQPHLLPFLQNTLPALRNAVRNGTASVEGVNPP 193


>Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical
           protein K07A1.8 protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 308 VSTYLIRKMDTCLQD*DTERVTSLDTYKPGVLSFRPRLGCVWS 180
           V + + +K+D+ L +  T R T + T  PG  +  P + CV S
Sbjct: 420 VDSSMHQKVDSLLNELRTVRATQIQTSGPGAAANCPNISCVSS 462


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
            protein C06A5.1 protein.
          Length = 1932

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 314  TRVSTYLIRKMDTCLQD*DTERVTSLDT 231
            T +  Y ++ +DTCL++   + +TSLDT
Sbjct: 1057 TSLCEYFLQYVDTCLKNHQIKNITSLDT 1084


>DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like
           protein protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 308 VSTYLIRKMDTCLQD*DTERVTSLDTYKPGVLSFRPRLGCVWS 180
           V + + +K+D+ L +  T R T + T  PG  +  P + CV S
Sbjct: 420 VDSSMHQKVDSLLNELRTVRATQIQTSGPGAAANCPNISCVSS 462


>Z81104-9|CAB70252.3|  488|Caenorhabditis elegans Hypothetical
           protein M199.2 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 224 PGVLSFRPRLGCVWSVHHCEYNFIFKL-NSSLISIGFGRNSTAVHARVRTTC 72
           PG + F+PR     + ++ +  F  KL N+S + I FG N+     RV T C
Sbjct: 53  PGDIDFQPRKIVFNAPYNEKQVFQIKLINTSALRIAFGINTYMRKLRVDTLC 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,446
Number of Sequences: 27780
Number of extensions: 311711
Number of successful extensions: 544
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)