Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A15
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    32   0.075
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    31   0.13 
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    30   0.30 
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    27   1.6  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   6.5  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    25   6.5  

>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 133 NALKCPATQVPLGKDSQGLPLGIQVLAAPNND 38
           N    P+  +P G  + GLP+GIQ++A   ND
Sbjct: 429 NMAGIPSVSIPFGTLNNGLPMGIQIMAQYLND 460


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = -2

Query: 499 YHHEGFNHMYVLWKYWMTKEPDNTALLY----TNNTTEANGILELIKKVCGFSKHCLFSV 332
           Y  +  + +++   Y +T  PDN+ +L     TNN      +  L+  VCG     LFS 
Sbjct: 304 YSQQPASAIFMYGSYILTSHPDNSLILQRLYSTNNELRIKFLGRLLGHVCGVQISKLFSC 363

Query: 331 VRLIEL 314
            R++ +
Sbjct: 364 GRIVSV 369


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 230 KWRPSHAERSARGALPLLLSPAAFQLRLFRRSQRTEVSRYSGTLRKRQPRIAAWDSSV 57
           K R  H + + +GA+  L   A F  R  R+ QR +   Y+  +RK + R+  +D +V
Sbjct: 771 KLRAQHRD-AKKGAIRTLRKDARFIARERRQEQRAKDQAYNEKMRKLENRLQHFDPAV 827


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 131 VDYGEIGEVERPQETRVVVGRHVRS-ARHEKDAIFAKL 241
           V+   IGE   P E + VV R+ R+ A+H +DAI A L
Sbjct: 54  VETNTIGEQRCPFEHKKVVARYHRAGAKHVEDAIEAAL 91


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 225 PFSPSLVNRSSLNSFVSFSAQAESTAGRNCNSIRRTTLKRQCLLKPHTFLISS 383
           PFSPS     SL    S ++ + + +  N NSI   +     L+  H+   S+
Sbjct: 66  PFSPSKATTVSLKESASLTSLSNNKSVSNLNSISGASSPSGSLVNLHSLTRSA 118


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 442 EPDNTALLYTNNTTEANGILELIKKV 365
           +P+N   L+T+N  + N I + +KK+
Sbjct: 356 DPENRDALWTSNYNQQNPIFQFLKKL 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,609
Number of Sequences: 5004
Number of extensions: 49377
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)