Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_A15
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0009 - 178579-178638,179151-179246,179504-179565,180181-18... 38 0.006
11_01_0441 - 3363069-3363137,3363273-3363430,3363549-3363613,336... 32 0.41
09_02_0523 + 10196272-10196375,10196551-10197488,10200247-102008... 32 0.41
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 31 0.54
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 30 1.2
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 30 1.6
04_01_0101 + 1041755-1041864,1041950-1042102,1042174-1042424,104... 29 2.9
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 29 3.8
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 28 5.0
09_04_0583 - 18699265-18699459,18701579-18701827,18703283-187036... 28 5.0
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 27 8.8
05_07_0281 - 28929983-28930103,28930266-28930453,28931741-28931902 27 8.8
04_01_0435 + 5693035-5693669,5694999-5695241,5695806-5696007,569... 27 8.8
>04_01_0009 -
178579-178638,179151-179246,179504-179565,180181-180245,
181271-181363,181489-181592,182070-182153,182223-182303,
182829-182880,183048-183119,183411-183486,183568-183680,
184056-184203,184295-184372,184511-184640,184733-184923,
187039-187099,187201-187371
Length = 578
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 133 NALKCPATQVPLGKDSQGLPLGIQVLAAP 47
N L PA VP+G D QGLP+G+Q++ P
Sbjct: 517 NLLGLPAITVPVGHDKQGLPIGLQLIGRP 545
>11_01_0441 -
3363069-3363137,3363273-3363430,3363549-3363613,
3363709-3363777,3363881-3363973,3364081-3364184,
3364327-3364410,3364486-3364693,3364809-3364880,
3365005-3365080,3365788-3365900,3366006-3366153,
3366996-3367073,3367968-3368097,3368296-3368486,
3368644-3368704,3368847-3368956,3369090-3369312
Length = 683
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 148 YFAVVNALKCPATQVPLGKDSQGLPLGIQVLAAPNNDGLCL 26
Y N L PA V +G D +GLP+G+Q + P ++ L
Sbjct: 614 YSIAGNFLGLPAITVKVGYDREGLPVGLQFIGRPWSEATLL 654
>09_02_0523 +
10196272-10196375,10196551-10197488,10200247-10200896,
10201003-10201746
Length = 811
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +2
Query: 287 GGVDSRKKLQLYQTNHAEETMLAEATHLFN 376
G D RKKL L + NH ET+L EA L N
Sbjct: 251 GAGDQRKKLILRKKNHQHETVLHEAVRLGN 280
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 307 LPAVD-SAWAEKLTKEFKEDLFTKLGENGVLLMPSAP 200
LPA S WAEK KE KE F LG N L+ P
Sbjct: 286 LPASGKSTWAEKCIKEHKEKRFILLGTNLALVQMKVP 322
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = -2
Query: 463 WKYWMTKEPDNTALLYTNNTTEANG----ILELIKKVCGFSKHCLFSVVRLIELQFLPAV 296
+ YW +K P+N+ L T + +G + +K + F ++C + E +F P++
Sbjct: 531 YNYWKSKMPNNSFLKSTKEYMDKDGKQIEYKDDVKDLLRFLRNCRRHAAQFKEDEF-PSI 589
Query: 295 DSAWAEKLTKEFKEDLFTKLGEN 227
+ KL +F++ +F ++ N
Sbjct: 590 VDHFYPKLMCDFQKAMFKEVEHN 612
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 374 N*LQNTISLSRVVGVEQCRIVGFLCHPVLPEYVHVV 481
N ++ + SR V +QCR+VG+ HPV + H +
Sbjct: 92 NVVEEDVLRSRSVYCDQCRVVGWSGHPVCGKRYHFI 127
>04_01_0101 +
1041755-1041864,1041950-1042102,1042174-1042424,
1042878-1043060,1043163-1043310,1043787-1043958,
1057226-1057366,1057478-1057624
Length = 434
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Frame = -2
Query: 265 EFKEDLFTKLGENGVLLMPSAP----------HVAPYHYSCLLRPFNFAYFAVVNALKCP 116
EFK L L ++G+L +P+ P AP + R F+ AVV+ C
Sbjct: 329 EFKSALAALLKDHGILAIPTVPGPPPMVGIQAQAAPLD-NYQARAFSLLDIAVVSGF-CQ 386
Query: 115 ATQVPLGKDSQGLPLGIQVLAAPNNDGLCLTGA 17
+ +PLGK GLP+ + ++A D L A
Sbjct: 387 VS-IPLGK-RNGLPVSVSLVARHGADHFLLNVA 417
>03_03_0206 +
15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = -2
Query: 505 QPYHHEGFNHMYVLWKYWMTKEPDNTALLYTNNTTEANGILELIKKVCGFSKHCLFSVVR 326
+P H +GFN M+ L++ W + ++ + N E L L + + C + +
Sbjct: 56 KPRHFDGFNSMH-LYRRWYRCFTNLSSFSFDNGHVERKDDLSLDQFRAQYDGKCPVLLTK 114
Query: 325 LIELQFLPAVDSAWAEKLTKEFKE 254
L E PA A++LT ++ E
Sbjct: 115 LAET--WPARTKWTAQQLTHDYGE 136
>11_01_0179 -
1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 404 RVVGVEQCRIVGFLCHPVLPEYVHVVEALMVIRLWGIRCRQLLSYFGYRSFHRTLEFS 577
RV+ +E C + G C E+V + L + +W R + G F +TL S
Sbjct: 632 RVLTLEDCSVTGEACGKHRLEHVGNLRHLRYLGIWNTRIDEFPKEVGDLKFLQTLNLS 689
>09_04_0583 -
18699265-18699459,18701579-18701827,18703283-18703669,
18703793-18703870,18704082-18704141,18704299-18704343,
18704506-18704718,18704867-18704932
Length = 430
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 224 RPSHAERSARGALPLLLSPAAFQLRLFR 141
+P H E S +G + L+LSPAA ++ R
Sbjct: 13 QPMHVEPSPKGEISLVLSPAAVGTKMAR 40
>07_03_1345 +
25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -2
Query: 364 CGFSKHCLFSVVRLIELQFLPAVDSAWAEKL--TKEFK--EDLFTKLGE 230
C F+ + L + RL+E+Q L +SA+ EKL K+F +LF + E
Sbjct: 285 CMFAAYLLRCLFRLLEVQNLEKSESAYFEKLRRVKKFAPLRELFRPISE 333
>05_07_0281 - 28929983-28930103,28930266-28930453,28931741-28931902
Length = 156
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 189 GATCGALGMRRTPFSPSLVNRSSLNSFVSFSAQAESTAGRNCNSIRRTTLKRQCLLKPHT 368
GAT +G + P L+N S ++ + + S+ R+ R +KR+C LK H
Sbjct: 24 GATASPVGFQHGPLLRRLIN-SDASAALKNNKHGFSSESRDA----RMDIKRRCELKEHE 78
Query: 369 F 371
F
Sbjct: 79 F 79
>04_01_0435 +
5693035-5693669,5694999-5695241,5695806-5696007,
5696188-5696583
Length = 491
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 118 PATQVPLGKDSQGLPLG 68
PA VP G DSQG+P G
Sbjct: 441 PAITVPAGYDSQGVPFG 457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,926,488
Number of Sequences: 37544
Number of extensions: 353984
Number of successful extensions: 964
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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