Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_A14
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 186 1e-48
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 186 1e-48
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 43 2e-05
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 33 0.026
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc... 26 2.2
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 2.2
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.0
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 3.9
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 5.2
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 5.2
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 5.2
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 6.8
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 6.8
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 25 6.8
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.0
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 24 9.0
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 24 9.0
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 186 bits (454), Expect = 1e-48
Identities = 82/114 (71%), Positives = 103/114 (90%)
Frame = -3
Query: 397 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 218
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 217 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 56
TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAI
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAI 116
Score = 42.3 bits (95), Expect = 3e-05
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1
Query: 51 GPVAKECADLWPRIASN 1
GPVAKECADLWPRIASN
Sbjct: 118 GPVAKECADLWPRIASN 134
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 186 bits (454), Expect = 1e-48
Identities = 82/114 (71%), Positives = 103/114 (90%)
Frame = -3
Query: 397 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 218
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 217 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 56
TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAI
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAI 116
Score = 42.3 bits (95), Expect = 3e-05
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1
Query: 51 GPVAKECADLWPRIASN 1
GPVAKECADLWPRIASN
Sbjct: 118 GPVAKECADLWPRIASN 134
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 42.7 bits (96), Expect = 2e-05
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Frame = -3
Query: 244 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 92
A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+
Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90
Query: 91 VNNKGEMKGSAI 56
VN + E G+ I
Sbjct: 91 VNKECEPLGTRI 102
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 32.7 bits (71), Expect = 0.026
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Frame = +3
Query: 3 LRQYAATDQHILWLQALXMAEPFISPLLLT--MTPALSSKYINTPSRLLNGFRCLMTTAG 176
L + + + W L + F+ ++ + ALSS+Y S L +T
Sbjct: 745 LLTFQTNPEELEWQLFLDDTQAFVKSIIAVANLAKALSSEYTFQKSVLAGLSAATRSTKD 804
Query: 177 ITFFRSSGLPFLTVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRP 353
+T SS T +++ +P P + R P P +A A +++ LI +P P
Sbjct: 805 LTILLSSSARHYTESSLATPVPLMSPIARVPATPLSA-ALGSAAQSITSPLIMSPAAIP 862
>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = -3
Query: 415 YNKMSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGS 236
YNK+ K+ + ++ G AVI G KN+ ++V + L R
Sbjct: 96 YNKLPKKSTDTAVILDPVMATGGTANAVITTLQEWGCKNIIFVSVLASEQALTRFSNIPG 155
Query: 235 GDMIVATVKK 206
+ ++ V K
Sbjct: 156 VEFVIGAVDK 165
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -3
Query: 211 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 101
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 3.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 63 EPFISPLLLTMTPALSSKYINTPS 134
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 3.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 226 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 95
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 270 LIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPR 392
L+P A Y P +A T+PT P I++ PAEPP+
Sbjct: 175 LLPPNAPYYHEIEPPRTASN-TSPT--PNSIKSAHPAEPPK 212
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 104 IVLKVYKYSITPSERFPLPDDHCRHYLFPEFR 199
+V +++++ E FPLP LFP R
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFPTLR 469
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 305 CPCVVGAVDYCSHWETQGDTEFR 373
CPC + + SHW+ + D FR
Sbjct: 14 CPCFLSCCAFMSHWKLK-DFSFR 35
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.6 bits (51), Expect = 6.8
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = +2
Query: 92 YDTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSV 259
Y+TR + K + +E PLP LF E F C + G QS+
Sbjct: 11 YNTRNMEKESSKDLVQNEDTPLPVQKISMSLFHEIVFVFIACTAQLMTQAGLGQSI 66
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 6.8
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = -2
Query: 377 GSEIPYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGR 240
G+ Y PG P + + G E R R + P + A GR
Sbjct: 103 GNVCVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPYEQARGR 148
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 6.8
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 377 GSEIPYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGH 228
G +P+ P PSGSS R + G+ RY+ + G GH
Sbjct: 421 GDGVPFSPSMPSGSS---RGGYHGRNPGGPNRQRYRGRRDGRGGNTGGGH 467
>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 214
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -3
Query: 175 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 56
P+ I +KP D V + +D+ + N+K ++ A+
Sbjct: 171 PSYSINYKKPVPAGDWVIVRVKDDVARLYNSKSQLLAEAL 210
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 133 DGVFIYFEDNAGVIVNNKGEMKGSAI 56
DG + E N ++VN +M+G+A+
Sbjct: 216 DGALLLNERNVEILVNKLTQMRGAAL 241
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 288 ITYRFFAPVLSAQLITAPTGRPREIR 365
+ Y F P+LS QL T P +P IR
Sbjct: 80 VAYSFSDPILSTQLRTPPP-QPTSIR 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,356
Number of Sequences: 5004
Number of extensions: 39011
Number of successful extensions: 119
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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