Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A12
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    64   2e-11
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    44   4e-05
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    29   0.83 
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    27   3.3  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   5.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   7.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   7.7  

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
 Frame = -2

Query: 827 ETSFMTFEGVQLQGAVKIMEKLNSXTFQXITRIVTAVDSQPM-FDGGVLINVLGRLKCDE 651
           E S ++FEG QLQG   I+EKL S  FQ +   ++ +D+QP    G V++ V G L  DE
Sbjct: 32  EESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDE 91

Query: 650 DP-PHLYMQTFVLKPLGDSFYVQHDIFRL 567
           +     Y Q F L     ++YV +D+FRL
Sbjct: 92  EQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = -2

Query: 806 EGVQL-QGAVKIMEKLNSXTFQXITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYM 630
           E + L  G  +I  K+    FQ    +++ VDS    +GG++I VLG +         + 
Sbjct: 54  ESISLCHGQQEIHNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFA 113

Query: 629 QTFVLKPLGDSFYVQHDIFRLGIHDI 552
           QTF L    + ++V +DIFR    D+
Sbjct: 114 QTFFLAEQPNGYFVLNDIFRFLREDV 139


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 475 RILDIWYTLYFSCIISSKNL 416
           +ILDIWY L ++C + ++NL
Sbjct: 238 QILDIWYLLGWNCYVEAQNL 257


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 314 FLCNENQILIL-DYPVRSLNRSLS*FHNRLV 403
           F C  +Q+L+  D  V SLN+ ++ FH +L+
Sbjct: 245 FACRSSQLLVSEDNVVSSLNKLINDFHGKLI 275


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 266 HFYNLFVYKHVTIYLHFLCNENQILILDYPVRS 364
           H  N+F+Y+H  + + FL  +  +   D P++S
Sbjct: 358 HLENVFLYRHYRVCVGFLNKQIYVFSSDEPLKS 390


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +1

Query: 559 WMPKRKMSC*T*NESPSGFNTKVCMYRCGGSSSHFNLPRTLIKTPPSNIGWESTAVTILV 738
           W  + K  C +   SP G N+ + +YR    +  F++P   I       GW     TI+ 
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAID------GWGQDLRTIMA 436

Query: 739 I 741
           I
Sbjct: 437 I 437


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 449  IFFLYHFVKEFMKLKGLDDYEIMIMIDLVIEQGNLK 342
            I ++ H + EF KLKGLD  E++ ++  V  QG L+
Sbjct: 1513 IGYIIHNLGEF-KLKGLDTTEMISLVYPVQLQGRLE 1547


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 613  FNTKVCMYRCGGSSSHFNLPRTLIKTPPSNIGWEST 720
            F+   C+Y    S   F+  R L+  PPS I  +ST
Sbjct: 1267 FSILTCIYNRITSGQGFSYSRLLVYLPPSQIEKKST 1302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,486,707
Number of Sequences: 5004
Number of extensions: 72584
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)