Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A12
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1376 - 26528208-26528279,26529690-26529986                       64   1e-10
01_06_0963 + 33441731-33442096,33442175-33442270                       42   6e-04
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    40   0.002
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129...    37   0.023
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028...    29   4.7  
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961...    29   6.2  
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421...    28   8.1  

>08_02_1376 - 26528208-26528279,26529690-26529986
          Length = 122

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 38/87 (43%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
 Frame = -2

Query: 821 SFMTFEGVQLQGAVKIMEKLNSXTFQXITRIVTAVDSQPMF-DGGVLINVLGRLKCDEDP 645
           S +TFEG Q  GA  I  KL S  F      +  VD QP    GG+L+ V G L+   D 
Sbjct: 33  SMLTFEGQQFLGAAAIAGKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDE 92

Query: 644 -PHLYMQTFVLKPLGDSFYVQHDIFRL 567
            P  + Q F L P G +FYVQ+D+FRL
Sbjct: 93  HPLKFSQMFQLLPAGGNFYVQNDMFRL 119


>01_06_0963 + 33441731-33442096,33442175-33442270
          Length = 153

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -2

Query: 827 ETSFMTFEGVQLQGAVKIMEKLNSXTFQXITRIVTAVDSQPM--FDGGVLINVLGRLKCD 654
           +TS ++FEG  + GA +I  KL    F+     V  VD QP   F GG+L+ V G L+  
Sbjct: 53  QTSMLSFEGHMVAGAEEIGRKLLGLPFEQCRHAVCTVDCQPTPSFPGGILVFVSGNLQLA 112

Query: 653 EDPPHLYMQTF 621
            +   L    F
Sbjct: 113 GEEHQLRFSQF 123


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -2

Query: 782 VKIMEKLNSX--TFQXITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKP 609
           V  ME +N+   +   +   + AVD+Q    GGV + V G L   +D    + Q+F L P
Sbjct: 66  VTTMEAINAKIVSMDIVRAEIKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAP 125

Query: 608 LGDSFYVQHDIFR 570
               ++V +DI R
Sbjct: 126 QEKGYFVLNDILR 138


>02_03_0315 -
           17610605-17610855,17611304-17611370,17612876-17612941,
           17613037-17613158,17613245-17613428,17614262-17614494,
           17614580-17614913,17615043-17615186,17615303-17615344
          Length = 480

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -2

Query: 785 AVKIMEKLNSXTF-QXITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLK 612
           +V  ME +N       ++R  +  VDSQ    GGV + V G L   +     + Q+F L 
Sbjct: 57  SVTTMEAINEKIMAMDMSRAEIKTVDSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLA 116

Query: 611 PLGDSFYVQHDIFR 570
           P    ++V +D+FR
Sbjct: 117 PQEKGYFVLNDMFR 130


>07_03_1180 -
           24601631-24602142,24602518-24602581,24602811-24602876,
           24602949-24603070,24603170-24603344,24603466-24603701,
           24603781-24604129,24605009-24605146,24605242-24605289
          Length = 569

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 719 VDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPL-GDSFYVQHDIFR 570
           VD+Q   +GGV I V G +  +    H + Q+F L P     ++V +D+ R
Sbjct: 83  VDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSFFLAPQESGGYFVLNDMLR 133


>03_02_0581 -
           9617039-9617936,9618057-9618502,9618985-9619071,
           9619276-9619416,9620220-9620411,9620491-9620652,
           9621116-9621199,9621329-9621706
          Length = 795

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 548 KLCHGCLNGKCRAEHKMNLRVASTRRFA-CTDVEDLRHTS 664
           +LCHGC  G  R E +  +R+AS R  A C D  + R  S
Sbjct: 102 ELCHGCAVGLMRDEDE-GVRLASVRLIALCADKLNTREGS 140


>03_04_0091 +
           17241555-17241602,17241685-17241822,17241901-17242198,
           17242281-17242513,17242632-17242827,17242911-17243032,
           17243100-17243165,17243373-17243436,17243851-17244176
          Length = 496

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 740 ITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY-VQHDIFR 570
           +T I TA D+Q     GVLI V G L   E     + Q+F L P     Y V +DIFR
Sbjct: 77  LTEIETA-DAQLSHQDGVLIVVTGSL-TSEGICRRFTQSFFLAPQESGGYVVLNDIFR 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,627,972
Number of Sequences: 37544
Number of extensions: 400846
Number of successful extensions: 760
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)