Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A12
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...    95   7e-20
AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h at...    31   1.0  
AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein...    31   1.0  
AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related ...    31   1.4  
AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related ...    31   1.4  
AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related ...    31   1.4  

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score = 94.7 bits (225), Expect = 7e-20
 Identities = 41/97 (42%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
 Frame = -2

Query: 842 NMYNVETSFMTFEGVQLQGAVKIMEKLNSXTFQXITRIVTAVDSQPMFDGGVLINVLGRL 663
           ++Y+ E S+MTFEG Q +G   I++K  +  F  I R +T +DSQP++DG + + VLG+L
Sbjct: 36  DLYDPENSYMTFEGQQAKGRDGILQKFTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQL 95

Query: 662 KCDEDPPHLYMQTFVLKPLGD-SFYVQHDIFRLGIHD 555
           K DEDP + + Q F+L+P    S+++ ++IFRL +H+
Sbjct: 96  KTDEDPINPFSQVFILRPNNQGSYFIGNEIFRLDLHN 132


>AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h
           atpase protein 11, isoforma protein.
          Length = 384

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 25  YMQSVLXSNVK*STKRCQI**QLFTIFDSTYIPR*PNRLEKHDETSVCMLLIFKSIIDNS 204
           Y+Q+V+    K S K  +   Q +    S  +P     L +  E ++  + +FK +ID  
Sbjct: 183 YLQTVIVVVPKISVKEWE---QKYATLSSMVVPGSSKLLTEEGEHALYTVTLFKKVIDEF 239

Query: 205 KNGVTQNRII 234
           KN   +N+ I
Sbjct: 240 KNTARENKFI 249


>AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein
           protein.
          Length = 384

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 25  YMQSVLXSNVK*STKRCQI**QLFTIFDSTYIPR*PNRLEKHDETSVCMLLIFKSIIDNS 204
           Y+Q+V+    K S K  +   Q +    S  +P     L +  E ++  + +FK +ID  
Sbjct: 183 YLQTVIVVVPKISVKEWE---QKYATLSSMVVPGSSKLLTEEGEHALYTVTLFKKVIDEF 239

Query: 205 KNGVTQNRII 234
           KN   +N+ I
Sbjct: 240 KNTARENKFI 249


>AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related
           export protein NXT1 protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 695 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 570
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 93  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


>AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform b protein.
          Length = 131

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 695 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 570
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 87  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 128


>AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform a protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 695 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 570
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 93  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,249,117
Number of Sequences: 27780
Number of extensions: 405588
Number of successful extensions: 860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)