Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A07
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   2.1  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   8.6  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   8.6  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/67 (20%), Positives = 33/67 (49%)
 Frame = +2

Query: 170 VEPSASP*GLQQLTQLFQNIGRSSILTLNIVLLKYEQMLLMIDLHSSRLTLERSVVCCLK 349
           +  ++ P   + + ++FQ +        + +L  Y+  ++++D  SSR+  E ++     
Sbjct: 187 IAENSIPITAENILEIFQELQAKFGFQYDSMLNMYDFFMVLLDSRSSRMDAENALKSLHA 246

Query: 350 VYIGRRS 370
            YIG R+
Sbjct: 247 DYIGGRN 253


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 338 KQQSVPKSNENYEDQSLEAFVHILIKQCLMLVLKSDQYF 222
           ++Q +   N + + Q LE   H+L+ QC  L+ +SD+ F
Sbjct: 287 QEQLIQNQNLDEKRQKLERD-HMLMAQCAGLMTRSDKSF 324


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/69 (20%), Positives = 30/69 (43%)
 Frame = -2

Query: 389 IIIISTYFAYLCRPSDNKQQSVPKSNENYEDQSLEAFVHILIKQCLMLVLKSDQYFGIIV 210
           +I +  Y  +   P   + Q  P  +EN +    E  +H+L+      ++K+  Y   ++
Sbjct: 58  LIYLQRYIVHHWSPLFEQFQDGPIPDENVKKHVRETLLHLLVSLDNFTLIKAVAYAVSLI 117

Query: 209 LIVEALMDW 183
             V+   +W
Sbjct: 118 ANVDYPDEW 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,501
Number of Sequences: 5004
Number of extensions: 33472
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)