Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A01
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    29   0.83 
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     28   1.9  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.9  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    26   5.9  

>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 377 VNSEIMPYRILYFVFDNFVSCKILFCEYIFSLGSFI 484
           V SE   YRI Y     +VSC   FCE+I   G ++
Sbjct: 197 VQSENSYYRIPYGGLFQYVSCPNYFCEWIEWFGCYL 232


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 409 KYSIGHYFGVNPEKIYLTHPTFFSEITSKEAVTVHDEYWH-PHVDKETYKSFHYTTLLYL 233
           KY I  +  V  +   L+HP  F   ++   + +H  Y+H P   K  + S    +LL L
Sbjct: 92  KYEIDCWIKVQ-QSTELSHPRVFDSASTPLKINLHIIYYHPPQPRKMQFLSLEPLSLLLL 150

Query: 232 TD 227
            D
Sbjct: 151 KD 152


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 365 YFFWVNSEIMPYRILYFVFDNFVSCKILF-CEYIFSLGSFIKIDEM 499
           +FF ++S  +   +LYF +   +S  + F C  +   G+F+ ++++
Sbjct: 577 WFFKISSSSLATAVLYFGYSLLISVLVFFLCGSVGFFGAFLFVNKI 622


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = -1

Query: 343 FSEITSKEAVTVHDEYWHPHVDKETYKSFHYTTLLYL----TDYNIDFKGGRFVFIDEKY 176
           FS  + K+  T+H       VD E Y+ ++     YL     DY++ F      + +EKY
Sbjct: 74  FSISSRKDDFTLHHWVLKSEVDSEAYEDWNKDETDYLFRLCKDYDLRFFVIADRYDNEKY 133

Query: 175 --NRTIEPRKGR 146
             +RT+E  K R
Sbjct: 134 KKHRTLEDLKDR 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,493,547
Number of Sequences: 5004
Number of extensions: 75815
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)