Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_A01
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0575 + 4701348-4701581                                           31   0.88 
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12...    28   8.2  
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     28   8.2  

>12_01_0575 + 4701348-4701581
          Length = 77

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -2

Query: 270 PTNRSTIPRFYT*LTTILTLKVEGLCSLTKNITELSNPGKDASACSLAAKKIY 112
           PT+RS +P F        T+ VEG  ++ K + E++ P    SA S+ A+K++
Sbjct: 3   PTSRSLLPFFLAESPVARTVAVEGEAAMGKGLGEVATP----SASSVRARKLH 51


>12_01_0017 -
           127617-127775,127920-128000,128284-128395,128486-129538,
           129617-129705,130136-130309,130566-130687,130790-130924,
           131132-131494,131561-131728,131850-131889
          Length = 831

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -2

Query: 279 IKKPTNRSTIPRFYT*LTTILTLKVEGLCSLTK----NITELSNP--GKD 148
           + KPT R    R Y  +T+  T KVEGL   +K    ++T+ S P  GKD
Sbjct: 226 VPKPTTRPATARHYFSVTSECTHKVEGLPLKSKTERSSVTKSSGPTIGKD 275


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 219 LTLKVEGLCSLTKNITELSNPGKDASACSLAAKKIYT 109
           L  +V G     K ITEL   GKD  A  +A +K+ T
Sbjct: 46  LIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGT 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,415,071
Number of Sequences: 37544
Number of extensions: 402372
Number of successful extensions: 922
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)