Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_A01
(850 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK025875-1|BAB15267.1| 319|Homo sapiens protein ( Homo sapiens ... 270 3e-72
BC008897-1|AAH08897.1| 331|Homo sapiens hypothetical protein FL... 214 4e-55
BC023602-1|AAH23602.1| 331|Homo sapiens hypothetical protein FL... 210 5e-54
BC009297-1|AAH09297.1| 55|Homo sapiens FLJ22222 protein protein. 65 4e-10
BC005029-1|AAH05029.1| 527|Homo sapiens LEPREL1 protein protein. 60 1e-08
AK001580-1|BAA91769.1| 527|Homo sapiens protein ( Homo sapiens ... 60 1e-08
AJ430351-1|CAD23039.2| 708|Homo sapiens leprecan-like 1 protein... 60 1e-08
U47926-1|AAC50464.1| 551|Homo sapiens protein B protein. 44 5e-04
U47924-4|AAB51312.1| 551|Homo sapiens B protein. 44 5e-04
BC080630-1|AAH80630.1| 683|Homo sapiens LEPREL2 protein protein. 44 5e-04
BC067251-1|AAH67251.1| 658|Homo sapiens LEPREL2 protein protein. 44 5e-04
BC017217-1|AAH17217.2| 605|Homo sapiens LEPREL2 protein protein. 44 5e-04
AJ430349-1|CAD23037.1| 736|Homo sapiens leprecan-like 2 protein... 44 5e-04
AB209320-1|BAD92557.1| 600|Homo sapiens LEPREL2 protein variant... 44 5e-04
U84573-1|AAB58363.1| 737|Homo sapiens lysyl hydroxylase isoform... 38 0.061
BC037169-1|AAH37169.1| 758|Homo sapiens procollagen-lysine, 2-o... 38 0.061
BC016834-1|AAH16834.1| 210|Homo sapiens PLOD2 protein protein. 38 0.061
AB209879-1|BAD93116.1| 796|Homo sapiens procollagen-lysine, 2-o... 38 0.061
L06419-1|AAA60116.1| 727|Homo sapiens lysyl hydroxylase protein. 34 0.75
BC016657-1|AAH16657.1| 727|Homo sapiens procollagen-lysine 1, 2... 34 0.75
AL096840-6|CAC19722.1| 727|Homo sapiens procollagen-lysine 1, 2... 34 0.75
AF490527-1|AAM12752.1| 727|Homo sapiens lysyl hydroxylase protein. 34 0.75
U93173-1|AAD00734.1| 49|Homo sapiens frataxin protein. 31 4.0
BC048097-1|AAH48097.1| 210|Homo sapiens frataxin protein. 31 4.0
BC023633-1|AAH23633.1| 210|Homo sapiens frataxin protein. 31 4.0
AL162730-2|CAH71829.1| 210|Homo sapiens frataxin protein. 31 4.0
>AK025875-1|BAB15267.1| 319|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22222 fis, clone HRC01658. ).
Length = 319
Score = 270 bits (663), Expect = 3e-72
Identities = 131/269 (48%), Positives = 179/269 (66%), Gaps = 2/269 (0%)
Frame = -1
Query: 826 LSRAVVIFSLLIIVYFTSNDGAFKIFAKQNEVISGKGQIVECSSAYLREIDKFEGCFPKQ 647
L V+ +LL+ ++DG ++ A++ EV++G+ V CS Y +FEGC P++
Sbjct: 49 LGAGFVLTALLLWSSLGADDGVAEVLARRGEVVAGRFIEVPCSEDYDSH-RRFEGCTPRK 107
Query: 646 CKRFVTDKVITDKEVDELLMIAXXXXXXXXXXXXXSILDLHSGALSMGQHFINFYKRSEG 467
C R VTD VIT +E + + +A SILDLHSGALS+G+HF+N Y+
Sbjct: 108 CGRGVTDVVITREEAERIRSVAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRYFGD 167
Query: 466 K--NVFTEKDFTTYKVVKNKIKYSIGHYFGVNPEKIYLTHPTFFSEITSKEAVTVHDEYW 293
K N+F+E+DF Y+ V+ K++ +I FG++ ++LT PTFFS I S EA T HDEYW
Sbjct: 168 KIQNIFSEEDFRLYREVRQKVQLTIAEAFGISASSLHLTKPTFFSRINSTEARTAHDEYW 227
Query: 292 HPHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIEPRKGRVSMFTSGKENL 113
H HVDK TY SF YT+LLYL++Y DF GGRF+F++E N+T+EPR GRVS FTSG ENL
Sbjct: 228 HAHVDKVTYGSFDYTSLLYLSNYLEDFGGGRFMFMEEGANKTVEPRAGRVSFFTSGSENL 287
Query: 112 HYVEKVTSGTRYAVTISFTCDKQYAIGDP 26
H VEKV GTRYA+TI+F+C+ + I DP
Sbjct: 288 HRVEKVHWGTRYAITIAFSCNPDHGIEDP 316
>BC008897-1|AAH08897.1| 331|Homo sapiens hypothetical protein
FLJ22222 protein.
Length = 331
Score = 214 bits (522), Expect = 4e-55
Identities = 104/228 (45%), Positives = 147/228 (64%), Gaps = 2/228 (0%)
Frame = -1
Query: 826 LSRAVVIFSLLIIVYFTSNDGAFKIFAKQNEVISGKGQIVECSSAYLREIDKFEGCFPKQ 647
L V+ +LL+ ++DG ++ A++ EV++G+ V CS Y +FEGC P++
Sbjct: 49 LGAGFVLTALLLWSSLGADDGVAEVLARRGEVVAGRFIEVPCSEDYDSH-RRFEGCTPRK 107
Query: 646 CKRFVTDKVITDKEVDELLMIAXXXXXXXXXXXXXSILDLHSGALSMGQHFINFYKRSEG 467
C R VTD VIT +E + + +A SILDLHSGALS+G+HF+N Y+
Sbjct: 108 CGRGVTDVVITREEAERIRSVAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRYFGD 167
Query: 466 K--NVFTEKDFTTYKVVKNKIKYSIGHYFGVNPEKIYLTHPTFFSEITSKEAVTVHDEYW 293
K N+F+E+DF Y+ V+ K++ +I FG++ ++LT PTFFS I S EA T HDEYW
Sbjct: 168 KIQNIFSEEDFRLYREVRQKVQLTIAEAFGISASSLHLTKPTFFSRINSTEARTAHDEYW 227
Query: 292 HPHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIEPRKG 149
H HVDK TY SF YT+LLYL++Y DF GGRF+F++E N+T+EPR G
Sbjct: 228 HAHVDKVTYGSFDYTSLLYLSNYLEDFGGGRFMFMEEGANKTVEPRAG 275
>BC023602-1|AAH23602.1| 331|Homo sapiens hypothetical protein
FLJ22222 protein.
Length = 331
Score = 210 bits (513), Expect = 5e-54
Identities = 103/228 (45%), Positives = 146/228 (64%), Gaps = 2/228 (0%)
Frame = -1
Query: 826 LSRAVVIFSLLIIVYFTSNDGAFKIFAKQNEVISGKGQIVECSSAYLREIDKFEGCFPKQ 647
L V+ +LL+ ++DG ++ A++ EV++G+ V CS Y +FEGC P++
Sbjct: 49 LGAGFVLTALLLWSSLGADDGVAEVLARRGEVVAGRFIEVPCSEDYDSH-RRFEGCTPRK 107
Query: 646 CKRFVTDKVITDKEVDELLMIAXXXXXXXXXXXXXSILDLHSGALSMGQHFINFYKRSEG 467
C R VTD VIT +E + + +A SILDLHSGALS+G+HF+N Y+
Sbjct: 108 CGRGVTDVVITREEAERIRSVAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRYFGD 167
Query: 466 K--NVFTEKDFTTYKVVKNKIKYSIGHYFGVNPEKIYLTHPTFFSEITSKEAVTVHDEYW 293
K N+F+E+DF Y+ V+ K++ +I FG++ ++LT PTFFS I S EA T HDEYW
Sbjct: 168 KIQNIFSEEDFRLYREVRQKVQLTIAEAFGISASSLHLTKPTFFSRINSTEARTAHDEYW 227
Query: 292 HPHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIEPRKG 149
H HVDK TY SF YT+LLYL++Y DF GGRF+F++E N+T+E R G
Sbjct: 228 HAHVDKVTYGSFDYTSLLYLSNYLEDFGGGRFMFMEEGANKTVERRAG 275
>BC009297-1|AAH09297.1| 55|Homo sapiens FLJ22222 protein protein.
Length = 55
Score = 64.9 bits (151), Expect = 4e-10
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = -1
Query: 160 PRKGRVSMFTSGKENLHYVEKVTSGTRYAVTISFTCDKQYAIGDP 26
P GRVS FTSG ENLH VEKV GTRYA+TI+F+C+ + I DP
Sbjct: 8 PLPGRVSFFTSGSENLHRVEKVHWGTRYAITIAFSCNPDHGIEDP 52
>BC005029-1|AAH05029.1| 527|Homo sapiens LEPREL1 protein protein.
Length = 527
Score = 59.7 bits (138), Expect = 1e-08
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Frame = -1
Query: 253 YTTLLYLTDYNIDFKGGRFVF--IDEK-YNRTIEPRKGRVSMFTSGKENLHYVEKVTSGT 83
Y+ LLY+ D DF+GG F+F +D K +I+P+ GR+ F+SG EN H V+ VT G
Sbjct: 424 YSALLYMND---DFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTKGK 480
Query: 82 RYAVTISFTCDKQY 41
R AV + FT D Y
Sbjct: 481 RCAVALWFTLDPLY 494
>AK001580-1|BAA91769.1| 527|Homo sapiens protein ( Homo sapiens
cDNA FLJ10718 fis, clone NT2RP3001096, weakly similar to
Rattus norvegicus leprecan mRNA. ).
Length = 527
Score = 59.7 bits (138), Expect = 1e-08
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Frame = -1
Query: 253 YTTLLYLTDYNIDFKGGRFVF--IDEK-YNRTIEPRKGRVSMFTSGKENLHYVEKVTSGT 83
Y+ LLY+ D DF+GG F+F +D K +I+P+ GR+ F+SG EN H V+ VT G
Sbjct: 424 YSALLYMND---DFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTKGK 480
Query: 82 RYAVTISFTCDKQY 41
R AV + FT D Y
Sbjct: 481 RCAVALWFTLDPLY 494
>AJ430351-1|CAD23039.2| 708|Homo sapiens leprecan-like 1 protein
protein.
Length = 708
Score = 59.7 bits (138), Expect = 1e-08
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Frame = -1
Query: 253 YTTLLYLTDYNIDFKGGRFVF--IDEK-YNRTIEPRKGRVSMFTSGKENLHYVEKVTSGT 83
Y+ LLY+ D DF+GG F+F +D K +I+P+ GR+ F+SG EN H V+ VT G
Sbjct: 605 YSALLYMND---DFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTKGK 661
Query: 82 RYAVTISFTCDKQY 41
R AV + FT D Y
Sbjct: 662 RCAVALWFTLDPLY 675
>U47926-1|AAC50464.1| 551|Homo sapiens protein B protein.
Length = 551
Score = 44.4 bits (100), Expect = 5e-04
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -1
Query: 271 TYKSFHYTTLLYLTDYNIDFKGGRFVFIDEK---YNRTIEPRKGRVSMFTSGKENLHYVE 101
TY+ Y+ LLYL D DF+GG F + + PR GR+ F+SG EN H V
Sbjct: 420 TYRD--YSGLLYLND---DFQGGDLFFTEPNALTVTARVRPRCGRLVAFSSGVENPHGVW 474
Query: 100 KVTSGTRYAVTISFT 56
VT G R A+ + T
Sbjct: 475 AVTRGRRCALALWHT 489
>U47924-4|AAB51312.1| 551|Homo sapiens B protein.
Length = 551
Score = 44.4 bits (100), Expect = 5e-04
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -1
Query: 271 TYKSFHYTTLLYLTDYNIDFKGGRFVFIDEK---YNRTIEPRKGRVSMFTSGKENLHYVE 101
TY+ Y+ LLYL D DF+GG F + + PR GR+ F+SG EN H V
Sbjct: 420 TYRD--YSGLLYLND---DFQGGDLFFTEPNALTVTARVRPRCGRLVAFSSGVENPHGVW 474
Query: 100 KVTSGTRYAVTISFT 56
VT G R A+ + T
Sbjct: 475 AVTRGRRCALALWHT 489
>BC080630-1|AAH80630.1| 683|Homo sapiens LEPREL2 protein protein.
Length = 683
Score = 44.4 bits (100), Expect = 5e-04
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -1
Query: 271 TYKSFHYTTLLYLTDYNIDFKGGRFVFIDEK---YNRTIEPRKGRVSMFTSGKENLHYVE 101
TY+ Y+ LLYL D DF+GG F + + PR GR+ F+SG EN H V
Sbjct: 552 TYRD--YSGLLYLND---DFQGGDLFFTEPNALTVTARVRPRCGRLVAFSSGVENPHGVW 606
Query: 100 KVTSGTRYAVTISFT 56
VT G R A+ + T
Sbjct: 607 AVTRGRRCALALWHT 621
>BC067251-1|AAH67251.1| 658|Homo sapiens LEPREL2 protein protein.
Length = 658
Score = 44.4 bits (100), Expect = 5e-04
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -1
Query: 271 TYKSFHYTTLLYLTDYNIDFKGGRFVFIDEK---YNRTIEPRKGRVSMFTSGKENLHYVE 101
TY+ Y+ LLYL D DF+GG F + + PR GR+ F+SG EN H V
Sbjct: 527 TYRD--YSGLLYLND---DFQGGDLFFTEPNALTVTARVRPRCGRLVAFSSGVENPHGVW 581
Query: 100 KVTSGTRYAVTISFT 56
VT G R A+ + T
Sbjct: 582 AVTRGRRCALALWHT 596
>BC017217-1|AAH17217.2| 605|Homo sapiens LEPREL2 protein protein.
Length = 605
Score = 44.4 bits (100), Expect = 5e-04
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -1
Query: 271 TYKSFHYTTLLYLTDYNIDFKGGRFVFIDEK---YNRTIEPRKGRVSMFTSGKENLHYVE 101
TY+ Y+ LLYL D DF+GG F + + PR GR+ F+SG EN H V
Sbjct: 474 TYRD--YSGLLYLND---DFQGGDLFFTEPNALTVTARVRPRCGRLVAFSSGVENPHGVW 528
Query: 100 KVTSGTRYAVTISFT 56
VT G R A+ + T
Sbjct: 529 AVTRGRRCALALWHT 543
>AJ430349-1|CAD23037.1| 736|Homo sapiens leprecan-like 2 protein
protein.
Length = 736
Score = 44.4 bits (100), Expect = 5e-04
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -1
Query: 271 TYKSFHYTTLLYLTDYNIDFKGGRFVFIDEK---YNRTIEPRKGRVSMFTSGKENLHYVE 101
TY+ Y+ LLYL D DF+GG F + + PR GR+ F+SG EN H V
Sbjct: 605 TYRD--YSGLLYLND---DFQGGDLFFTEPNALTVTARVRPRCGRLVAFSSGVENPHGVW 659
Query: 100 KVTSGTRYAVTISFT 56
VT G R A+ + T
Sbjct: 660 AVTRGRRCALALWHT 674
>AB209320-1|BAD92557.1| 600|Homo sapiens LEPREL2 protein variant
protein.
Length = 600
Score = 44.4 bits (100), Expect = 5e-04
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -1
Query: 271 TYKSFHYTTLLYLTDYNIDFKGGRFVFIDEK---YNRTIEPRKGRVSMFTSGKENLHYVE 101
TY+ Y+ LLYL D DF+GG F + + PR GR+ F+SG EN H V
Sbjct: 469 TYRD--YSGLLYLND---DFQGGDLFFTEPNALTVTARVRPRCGRLVAFSSGVENPHGVW 523
Query: 100 KVTSGTRYAVTISFT 56
VT G R A+ + T
Sbjct: 524 AVTRGRRCALALWHT 538
>U84573-1|AAB58363.1| 737|Homo sapiens lysyl hydroxylase isoform 2
protein.
Length = 737
Score = 37.5 bits (83), Expect = 0.061
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -1
Query: 289 PHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIE-PRKGRVSMFTSGKENL 113
PH D T+ T + L + DF+GG F+ +YN +IE PRKG M +L
Sbjct: 665 PHHDASTF-----TINIALNNVGEDFQGGGCKFL--RYNCSIESPRKGWSFMHPGRLTHL 717
Query: 112 HYVEKVTSGTRYAVTISF 59
H V +GTRY + +SF
Sbjct: 718 HEGLPVKNGTRY-IAVSF 734
>BC037169-1|AAH37169.1| 758|Homo sapiens procollagen-lysine,
2-oxoglutarate 5-dioxygenase 2 protein.
Length = 758
Score = 37.5 bits (83), Expect = 0.061
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -1
Query: 289 PHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIE-PRKGRVSMFTSGKENL 113
PH D T+ T + L + DF+GG F+ +YN +IE PRKG M +L
Sbjct: 686 PHHDASTF-----TINIALNNVGEDFQGGGCKFL--RYNCSIESPRKGWSFMHPGRLTHL 738
Query: 112 HYVEKVTSGTRYAVTISF 59
H V +GTRY + +SF
Sbjct: 739 HEGLPVKNGTRY-IAVSF 755
>BC016834-1|AAH16834.1| 210|Homo sapiens PLOD2 protein protein.
Length = 210
Score = 37.5 bits (83), Expect = 0.061
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -1
Query: 289 PHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIE-PRKGRVSMFTSGKENL 113
PH D T+ T + L + DF+GG F+ +YN +IE PRKG M +L
Sbjct: 138 PHHDASTF-----TINIALNNVGEDFQGGGCKFL--RYNCSIESPRKGWSFMHPGRLTHL 190
Query: 112 HYVEKVTSGTRYAVTISF 59
H V +GTRY + +SF
Sbjct: 191 HEGLPVKNGTRY-IAVSF 207
>AB209879-1|BAD93116.1| 796|Homo sapiens procollagen-lysine,
2-oxoglutarate 5-dioxygenase 2 isoform b variant
protein.
Length = 796
Score = 37.5 bits (83), Expect = 0.061
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -1
Query: 289 PHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIE-PRKGRVSMFTSGKENL 113
PH D T+ T + L + DF+GG F+ +YN +IE PRKG M +L
Sbjct: 724 PHHDASTF-----TINIALNNVGEDFQGGGCKFL--RYNCSIESPRKGWSFMHPGRLTHL 776
Query: 112 HYVEKVTSGTRYAVTISF 59
H V +GTRY + +SF
Sbjct: 777 HEGLPVKNGTRY-IAVSF 793
>L06419-1|AAA60116.1| 727|Homo sapiens lysyl hydroxylase protein.
Length = 727
Score = 33.9 bits (74), Expect = 0.75
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -1
Query: 289 PHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIE-PRKGRVSMFTSGKENL 113
PH D T+ T + L +D++GG F+ +YN +I PRKG M +
Sbjct: 655 PHHDASTF-----TINIALNRVGVDYEGGGCRFL--RYNCSIRAPRKGWTLMHPGRLTHY 707
Query: 112 HYVEKVTSGTRYAVTISF 59
H T GTRY + +SF
Sbjct: 708 HEGLPTTRGTRY-IAVSF 724
>BC016657-1|AAH16657.1| 727|Homo sapiens procollagen-lysine 1,
2-oxoglutarate 5-dioxygenase 1 protein.
Length = 727
Score = 33.9 bits (74), Expect = 0.75
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -1
Query: 289 PHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIE-PRKGRVSMFTSGKENL 113
PH D T+ T + L +D++GG F+ +YN +I PRKG M +
Sbjct: 655 PHHDASTF-----TINIALNRVGVDYEGGGCRFL--RYNCSIRAPRKGWTLMHPGRLTHY 707
Query: 112 HYVEKVTSGTRYAVTISF 59
H T GTRY + +SF
Sbjct: 708 HEGLPTTRGTRY-IAVSF 724
>AL096840-6|CAC19722.1| 727|Homo sapiens procollagen-lysine 1,
2-oxoglutarate 5-dioxygenase 1 protein.
Length = 727
Score = 33.9 bits (74), Expect = 0.75
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -1
Query: 289 PHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIE-PRKGRVSMFTSGKENL 113
PH D T+ T + L +D++GG F+ +YN +I PRKG M +
Sbjct: 655 PHHDASTF-----TINIALNRVGVDYEGGGCRFL--RYNCSIRAPRKGWTLMHPGRLTHY 707
Query: 112 HYVEKVTSGTRYAVTISF 59
H T GTRY + +SF
Sbjct: 708 HEGLPTTRGTRY-IAVSF 724
>AF490527-1|AAM12752.1| 727|Homo sapiens lysyl hydroxylase protein.
Length = 727
Score = 33.9 bits (74), Expect = 0.75
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -1
Query: 289 PHVDKETYKSFHYTTLLYLTDYNIDFKGGRFVFIDEKYNRTIE-PRKGRVSMFTSGKENL 113
PH D T+ T + L +D++GG F+ +YN +I PRKG M +
Sbjct: 655 PHHDASTF-----TINIALNRVGVDYEGGGCRFL--RYNCSIRAPRKGWTLMHPGRLTHY 707
Query: 112 HYVEKVTSGTRYAVTISF 59
H T GTRY + +SF
Sbjct: 708 HEGLPTTRGTRY-IAVSF 724
>U93173-1|AAD00734.1| 49|Homo sapiens frataxin protein.
Length = 49
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 250 YSGTICRFLYPHEDASIHHELLQLPLMLSLRKKLDVSNIFFLG 378
Y T ++Y H+ S+H ELL L +L+ KLD+S++ + G
Sbjct: 5 YDWTGKNWVYSHDGVSLH-ELLAAELTKALKTKLDLSSLAYSG 46
>BC048097-1|AAH48097.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 250 YSGTICRFLYPHEDASIHHELLQLPLMLSLRKKLDVSNIFFLG 378
Y T ++Y H+ S+H ELL L +L+ KLD+S++ + G
Sbjct: 166 YDWTGKNWVYSHDGVSLH-ELLAAELTKALKTKLDLSSLAYSG 207
>BC023633-1|AAH23633.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 250 YSGTICRFLYPHEDASIHHELLQLPLMLSLRKKLDVSNIFFLG 378
Y T ++Y H+ S+H ELL L +L+ KLD+S++ + G
Sbjct: 166 YDWTGKNWVYSHDGVSLH-ELLAAELTKALKTKLDLSSLAYSG 207
>AL162730-2|CAH71829.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 250 YSGTICRFLYPHEDASIHHELLQLPLMLSLRKKLDVSNIFFLG 378
Y T ++Y H+ S+H ELL L +L+ KLD+S++ + G
Sbjct: 166 YDWTGKNWVYSHDGVSLH-ELLAAELTKALKTKLDLSSLAYSG 207
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,804,287
Number of Sequences: 237096
Number of extensions: 2472516
Number of successful extensions: 4060
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4051
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -