SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P24
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)                  32   0.44 
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)                   31   0.77 
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        31   1.3  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_3218| Best HMM Match : Ribosomal_S25 (HMM E-Value=0.65)             30   1.8  
SB_35902| Best HMM Match : DUF567 (HMM E-Value=9.7)                    30   2.3  
SB_23520| Best HMM Match : TIL (HMM E-Value=0.0062)                    30   2.3  
SB_54255| Best HMM Match : DUF329 (HMM E-Value=7.8)                    30   2.3  
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)          29   4.1  
SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2)                29   4.1  
SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_26314| Best HMM Match : SURF6 (HMM E-Value=2.8)                     29   5.4  
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_8090| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)                 28   7.2  
SB_10374| Best HMM Match : Fibrinogen_BP (HMM E-Value=2.2)             28   7.2  
SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)                   28   7.2  
SB_57807| Best HMM Match : SNF (HMM E-Value=5.9e-10)                   28   9.5  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)                28   9.5  
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)                  28   9.5  
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    28   9.5  

>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
          Length = 323

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 170 QSEPVAEETNNERIRTLKTDVSDVNSSKDAQDES--RNSIDENKEKDHDNASSAS 328
           + E   EE   E +    TD   ++SSKD  DES   N  DE+ E D  N S  S
Sbjct: 59  EKEEGKEEDGEEEV---VTDERGISSSKDESDESDESNESDESNESDKSNESDES 110



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 191 ETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSAS 328
           + +NE  ++ ++D  + +   D  DES  S DE+ E D  N S  S
Sbjct: 132 DKSNESDKSNESDKRNESDESDEDDESNGS-DESNESDESNGSDES 176



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 158 VKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSAS 328
           +  ++ E    + +NE   + ++D S+ +   +  DES  S DE+ E D  N S  S
Sbjct: 79  ISSSKDESDESDESNESDESNESDKSNESDESNESDESNES-DESNESDKSNESDKS 134



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 191 ETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSAS 328
           + +NE   + ++D S+ +   +  DES  S DE+ E D  N S  S
Sbjct: 186 DESNESDESNESDESNESDESNGSDESNES-DESNESDESNGSDES 230



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 176 EPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSAS 328
           E    + +NE   + ++D S+ +   +  DES  S DE+ E D  N S  S
Sbjct: 175 ESNGSDESNESDESNESDESNESDESNESDESNGS-DESNESDESNESDES 224



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 191 ETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSAS 328
           + +NE  +  ++D SD +   +  DES  S DE+   D  N S  S
Sbjct: 138 DKSNESDKRNESDESDEDDESNGSDESNES-DESNGSDESNGSDES 182


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +2

Query: 152 KRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSAST 331
           K++K+T SE   +E  N+   T+   +SD       Q++S    +  +E D +N ++ S 
Sbjct: 510 KQMKLTSSESPDDEPFNDLDVTMLDYISDAGKETTVQNDSSEGRNPLREVDPNNPNNLSE 569

Query: 332 VE 337
           +E
Sbjct: 570 IE 571


>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
          Length = 560

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 227 DVSDVNSSKDAQDESRNSIDENKEKDHDNA 316
           DV D+N   DA DE+ NS  ++ + DHD+A
Sbjct: 423 DVDDINGDDDADDENINS--DDADDDHDDA 450


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 398  C*IDFLNTSTFLKHFTYHQELQQ*RRCSHCRDLFLCSRLYYFEIHPE 258
            C   F   S++  HF YH +     +CSHC + F  +R    E H E
Sbjct: 918  CDKGFSRVSSYKTHFRYHSKDTLTFKCSHCNETF-SNRQSLIEHHRE 963



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 386  FLNTSTFLKHFTYHQELQQ*RRCSHCRDLF 297
            F   S++  HF YH +     +CSHC + F
Sbjct: 1039 FSRVSSYKTHFRYHSKDSLTFKCSHCNETF 1068


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 188 EETNNERI-RTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSAS 328
           EE+N + + RTL  +  D N +KD Q+ +R  + +N  KD + A   S
Sbjct: 378 EESNIDDVDRTLTQEDVDENQAKDKQNLNR-QLSDNSSKDEEEAEGGS 424


>SB_3218| Best HMM Match : Ribosomal_S25 (HMM E-Value=0.65)
          Length = 290

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 146 KCKRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNA 316
           K K+ K+  +E    E +NE       D++D N  +  +    +S  ENKEK+   A
Sbjct: 86  KAKKSKLKVTE--GNENDNENASENGVDIADYNKDEKGKKSHSSSKGENKEKNSKKA 140


>SB_35902| Best HMM Match : DUF567 (HMM E-Value=9.7)
          Length = 205

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/35 (34%), Positives = 25/35 (71%)
 Frame = +3

Query: 465 VSANLLFSKQNIFRFSKVTINLLCIMISAYQFECI 569
           VS +L+F  ++ FRF++V+ +L+  + S ++F C+
Sbjct: 164 VSGSLVFQVRSCFRFARVSGSLVFQVRSCFRFTCV 198


>SB_23520| Best HMM Match : TIL (HMM E-Value=0.0062)
          Length = 238

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 152 KRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDN 313
           K    T++   AE T  +   T  T  +  N+ K   D+ RN  D N + +H+N
Sbjct: 166 KATTTTKTSVKAEATTTKPEATTPTTTTTTNNKK--ADDDRNDEDNNNDSNHNN 217


>SB_54255| Best HMM Match : DUF329 (HMM E-Value=7.8)
          Length = 82

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 161 KITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKD 304
           K+TQ +   E+ +NE       +  +  S K++Q+E R + +  K+KD
Sbjct: 33  KVTQEDQEPEKKSNESDPQKDQETDNKTSKKESQEELREADETPKKKD 80


>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
 Frame = +2

Query: 131 KMGNIKCKRVK--ITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKD 304
           K  N + KR++   T S+   ++TN   +   ++D  D +S  D +DE    ++E+  ++
Sbjct: 60  KTKNEEKKRMRGHTTSSDSSDDDTN---VIYDESDDDDYSSRNDEEDEDAEEVEEHDGEN 116

Query: 305 HDNASSASTVEVLDD 349
            + +   +TVE  DD
Sbjct: 117 AEVSQEVNTVETDDD 131


>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
          Length = 497

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 227 DVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK 352
           D S+ +S+KD  D   N  D NKE D D  +   + E ++DK
Sbjct: 294 DSSEEDSAKDKNDSVTNG-DVNKEDDKDKENQDVSKENVNDK 334


>SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2)
          Length = 228

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/103 (21%), Positives = 47/103 (45%)
 Frame = +2

Query: 197 NNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK*SVLKMWM 376
           +NE  ++ ++DVS+ + SKD  D+  +  +  K  + D   S  + +  DD     ++  
Sbjct: 70  DNELEKSDESDVSETDPSKDQYDDDGDDNEIEKSDESDVPESDPSKDQYDDDGDDNELEK 129

Query: 377 CSKNLFSNFKDPKIILINFFAHIFERNLFC*CKFVIFKTKYIS 505
             K+  +  +  K   ++     F+R  +   +  I + +YIS
Sbjct: 130 SDKSYVTETEPTKDQSLDAKQFSFQRRRYISRRRYISRRRYIS 172


>SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +2

Query: 155 RVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTV 334
           R+K T  +     +NN+       + +D N++ D ++++ NS +EN   +  N +  S  
Sbjct: 2   RMKTTTMKMTFNNSNNKNYNNNSYNENDNNNNSDNKNDNNNSDNENDNNNSYNENDNSNS 61

Query: 335 EVLDD 349
           +  +D
Sbjct: 62  DNEND 66


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 161  KITQSEPVAEETNNERIRTLKTDVSDVNSS-KDAQDESRNSIDENKEKDHDNASSAS 328
            K  Q E    E  N+  + LK     V+   + A+DE   S+D  + K +D A++ S
Sbjct: 1323 KKLQEEQAKREERNKLFKELKQRKISVDEEVEQAKDELMKSLDARRPKSNDQATTIS 1379


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +2

Query: 170  QSEPVAEETNNERIRTLKTDVSDVNSSKDA-----QDESRNSIDENKEKDHDNASSASTV 334
            ++   +EE++N++  +L   + D+N   DA       E RNS        HD + SA   
Sbjct: 3053 KNSQTSEESSNKQELSLFHPLEDLNKRLDAFLEKVAQERRNSFRSTSSTSHDYSGSAQLA 3112

Query: 335  EVLDD 349
               DD
Sbjct: 3113 HSKDD 3117


>SB_26314| Best HMM Match : SURF6 (HMM E-Value=2.8)
          Length = 222

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 152 KRVKITQSEPVAEET--NNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHD 310
           K VKI   EP    T   ++R++  K    + N    + DE + + DE+ EK+HD
Sbjct: 4   KSVKIRNKEPSQSTTEHKDDRVKEAK-QAEESNPPSTSADEDKKNHDED-EKNHD 56


>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 188 EETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASS 322
           ++T N + +T K +    N +KD   E+++   ENK K  +N ++
Sbjct: 497 DKTKNNKDKT-KENKDKTNENKDKTKENKDKTKENKNKTKENKTA 540


>SB_8090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 155 RVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQ--DESRNSIDEN 292
           +V  TQ        NN    +     SD N++KD    DE+ NSIDEN
Sbjct: 110 KVVTTQQCKDDNNNNNGNKNSKNNSDSDYNNNKDNNNDDENSNSIDEN 157


>SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)
          Length = 192

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 188 EETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDN 313
           EE NNE     K D    N  +D  DE RN+ DE++  +  N
Sbjct: 89  EERNNEEED--KHDEERNNEHEDRHDEERNNEDEDRHDEERN 128


>SB_10374| Best HMM Match : Fibrinogen_BP (HMM E-Value=2.2)
          Length = 707

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 158 VKITQSEPV--AEETNNERIRTLKTDV-SDVNSSKDAQDESRNSIDENKEKDHDNASSAS 328
           VK+ + E V   +  NN+       D  +D ++  D  +++ N  D + + D+DN +  S
Sbjct: 644 VKVNRKEAVNSCDNNNNDNDNDNDNDNDNDNDNDNDNDNDNDNDNDNDNDNDNDNDNDNS 703

Query: 329 TV 334
           T+
Sbjct: 704 TI 705


>SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)
          Length = 566

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 185 AEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDH-DNASSASTVEVLDD 349
           +E+  N     L+ D  D N  K A D    ++D++ + DH   A+    + + DD
Sbjct: 376 SEKAENPDEINLEDDNDDSNHGKKATDPDEINLDDSDDSDHGKKATDPDEINLEDD 431


>SB_57807| Best HMM Match : SNF (HMM E-Value=5.9e-10)
          Length = 260

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 227 DVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDD 349
           D  + ++SKD ++   +  +EN +K   N + A+T+  ++D
Sbjct: 210 DNENSDNSKDNENSDNSKDNENSDKSKHNVNDAATLIAIND 250


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 152 KRVKITQSEPVAEETN--NERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHD 310
           KR  + ++  VA+       + + +KT VSD  S  D   ES+    +N + D D
Sbjct: 491 KRPALLRTSDVAKSVGLVQHKKKKMKTSVSDDESDSDDDSESQIPYADNSDDDDD 545


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +2

Query: 128 CKMGNIKCKRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEK 301
           CK  +   K      +EP     +N     L++D  D     D QD++RN++ +  +K
Sbjct: 610 CKTESCDTKFPDKKYTEPDVTNVSNNVSNILESDDWDTELDSDQQDDARNTVCQAGQK 667


>SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)
          Length = 762

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
 Frame = +2

Query: 161 KITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESR-NSIDE------------NKEK 301
           KIT+ EP  +   NE I  +  D   + S  +  D +  +S DE            NKE+
Sbjct: 30  KITEQEP--DSAMNEEISNMTADEQSLGSEVEDNDMNELSSFDEDKFSEGPDTDRANKER 87

Query: 302 DHDNASSASTVEVLDDK*SVLKMWMCSKNLFSNFK 406
             + +++  T++       V K W+ S+ L ++F+
Sbjct: 88  LGNASANPKTIKTYQSHVRVFKDWLRSEGLPADFE 122


>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
          Length = 1466

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 167  TQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASS-ASTVEVL 343
            T S+PV E    ER R + ++ + VNSSKD  D+ R ++ E KE    N    A   E L
Sbjct: 1364 TVSKPVFEI---ERERQVSSESNRVNSSKDLADK-RENVAECKEGLAGNRKDPADNNEGL 1419

Query: 344  DDK 352
             DK
Sbjct: 1420 ADK 1422


>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1263

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 197 NNERIRTLKTDVSDVNSSKDAQD-ESRNSIDEN 292
           NN    +     SD N++KD  D E+ NSIDEN
Sbjct: 181 NNGNKNSNNNSDSDYNNNKDNNDDENSNSIDEN 213


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 215  TLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK*SVLKMWMCS 382
            T+ T+    +    + DE+   + E  E   D ASSA+T   L      LK W  S
Sbjct: 2226 TMDTEALQSDDEGMSDDETDTDMSEASEAMWDGASSANTTAALQIGLGCLKPWQNS 2281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,745,195
Number of Sequences: 59808
Number of extensions: 397169
Number of successful extensions: 1632
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -