Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P23
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.93 
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.6  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   8.7  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.7  

>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 329 EKTK*RTVKVRMNQKVKQ*QKHNR*YLWRIRSERR 433
           EKTK R  KV +N  V+  Q HNR    R R ++R
Sbjct: 38  EKTKLRPNKVFLNNMVRNVQSHNRGINNRRRDQKR 72


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 31  FYVVWNALSSDGRKIEKYFRLTIKLQFWRVSHELLNNYAY 150
           F V W ++   G+ I K   L   + FW V+ +    Y Y
Sbjct: 797 FPVNWPSMDIKGKPIFKPEELLYSMSFWIVADDQKRKYRY 836


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 539 PSTQPAACDTCGQTTMSVSLAGSDGVVLPSAPPIALSARS 420
           P ++P   DT G    +  +A S    LP++PP+    ++
Sbjct: 607 PLSKPQPKDTKGSKLGNTFVAPSPAASLPASPPVGTELKT 646


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 521 ACDTCGQTTMSVSLAGSDGVVLPSAPPIALSARSLSSTNIT 399
           AC TC  +T S+S +G+  +   S  P  +  R+ SS  IT
Sbjct: 110 ACSTCTISTSSLSYSGT--ISSTSIAPSMIGTRTSSSYFIT 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,080
Number of Sequences: 5004
Number of extensions: 38899
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)