Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_P23
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0194 + 15504780-15506114 30 1.3
05_05_0162 + 22838907-22839070,22839180-22840063,22841164-22841228 29 2.2
12_02_0759 - 22882435-22882731 29 2.9
07_03_1367 + 26072270-26072374,26074047-26074724 29 2.9
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 29 2.9
11_08_0098 - 28334865-28336114,28336228-28336357 29 3.9
11_04_0251 - 15348685-15349257,15349295-15349381 29 3.9
07_03_0750 - 21226896-21227011,21227116-21227370,21227469-212287... 29 3.9
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 29 3.9
06_01_0801 - 5993726-5994160,5994811-5994969,5995071-5995211,599... 28 5.1
>09_04_0194 + 15504780-15506114
Length = 444
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2
Query: 554 VRRGRPSTQPAACDTCGQTTMSVSL-AGSDGVVLPSAPPIALSAR 423
VR+G +T PA TCG T+++ L AG+ G+ S +AL A+
Sbjct: 167 VRQGPLATAPAFLFTCGPTSLTQGLAAGAAGMASLSRARLALPAQ 211
>05_05_0162 + 22838907-22839070,22839180-22840063,22841164-22841228
Length = 370
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +3
Query: 420 GASGERDGRRRRKHHTVASGQR 485
G SGE GR RR H TVAS R
Sbjct: 8 GLSGEVSGRLRRSHSTVASPSR 29
>12_02_0759 - 22882435-22882731
Length = 98
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 429 GERDGRRRRKHHTVASGQRHR 491
G R+GR +HH V GQR R
Sbjct: 36 GAREGRTHERHHLVERGQRRR 56
>07_03_1367 + 26072270-26072374,26074047-26074724
Length = 260
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 298 SYHPCWLRCPPPLRQRIHGLHPQFRCL 218
S H C ++ PPP IHGL P + L
Sbjct: 42 STHKCLVKPPPPSHFTIHGLWPSYNKL 68
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 599 MDQRLSG*LGLS--GTRVRRGRPSTQPAACDTCGQTTMSVSLAGSDGVVLPS 450
+DQ+ G LGL G+ RGRP + C T S + A +DGV+L S
Sbjct: 687 IDQQTRGNLGLGLPGSMANRGRPIAR-TKCVKFAPTGRSFAAATTDGVLLYS 737
>11_08_0098 - 28334865-28336114,28336228-28336357
Length = 459
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = -3
Query: 274 CPPPLRQRIHGLHPQF---RCLELSRYHRCQFFL 182
CP LR R+ GLHP RC S Y R +L
Sbjct: 99 CPACLRDRLAGLHPPSDLRRCKSFSYYARSSSYL 132
>11_04_0251 - 15348685-15349257,15349295-15349381
Length = 219
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 427 AESAMGGADGSTTPSLPAKDTDIVVWPHVSQAAGCVDGRPRRTRV 561
AE A GG + TP +D VV+P AG D P R RV
Sbjct: 55 AEGAAGGGAVTATPLFTGEDASSVVFPRNGGDAGEEDA-PARPRV 98
>07_03_0750 -
21226896-21227011,21227116-21227370,21227469-21228785,
21228918-21228984
Length = 584
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 605 FMMDQRLSG*LGLSGTRVRRGRPSTQ-PAACDTCG 504
F +D G + +S + RRGRPS + P C CG
Sbjct: 251 FAIDHVSGGSVRVSMAQARRGRPSPRIPVKCSECG 285
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -2
Query: 545 GRPSTQPAACDTCGQTTMSVSLAGSDGVVLPSAPPIALSARSLSSTNITCC 393
G PS P A T + SL G+ PSA +ALS R+L +TN C
Sbjct: 36 GVPSDPPPAPPTAVKKKKKRSLPGTPD---PSAEVVALSPRTLLATNRFVC 83
>06_01_0801 -
5993726-5994160,5994811-5994969,5995071-5995211,
5995999-5996097,5996180-5996542,5996929-5997150,
5997257-5997448,5997997-5998056,5998162-5998378,
5998471-5998523,5999013-5999084,5999928-6000113,
6000986-6001132,6002902-6003075,6003149-6003300,
6004269-6004360,6004549-6004710,6004875-6005053,
6005173-6005304,6005454-6005507,6006082-6006191,
6006317-6006487,6006577-6006663,6008488-6008611,
6009355-6009564
Length = 1330
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -2
Query: 545 GRPSTQPAACDTCGQTTMSVSLAGSDGVVLPSAPPIALSARSLSSTNITC 396
G P P A T M AG+DG V+P A + A S+ C
Sbjct: 27 GMPLAPPTAMPRAPPTAMVARAAGADGAVVPVADRLDQLADSVQLAREDC 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,015,924
Number of Sequences: 37544
Number of extensions: 252676
Number of successful extensions: 978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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