Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_P23
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54250| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_38809| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6)                   28   6.9  
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   6.9  

>SB_54250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 514 SQAAGCVDGRPRRTRVPDKPNYPLSLWS 597
           S A   VDGRP+R +    PN P+ +W+
Sbjct: 53  SSARVSVDGRPKRIKKYTDPNEPVLVWT 80


>SB_38809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 460 TTPSLPAK-DTDIVVWPHVSQAAGCVDGRPRRTR 558
           TTP +P K DT+ V    VSQA  C D  P +++
Sbjct: 130 TTPMVPGKVDTEAVDTKTVSQAVHCQDVLPTKSQ 163


>SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6)
          Length = 448

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
 Frame = -3

Query: 277 RCPPPLRQRIHGLHPQFRCLELSR---YHR----CQFFLSLNTYLVHYFCTHNYLTIRVK 119
           RC       I G HP  R   ++R   YH     C+  L    +  H+  +++ +  ++K
Sbjct: 227 RCGTHAPGWIVGSHPSLRYSLVTRKVCYHWSGSCCRSPLLKVAHFQHFSYSNSKMNSKLK 286

Query: 118 LSKIVILWSNENIFRFFFRHLI 53
           L+   +LW N  +F  F++H+I
Sbjct: 287 LN--YVLWLNTWLFDQFYKHMI 306


>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 376

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 554 VRRGRPSTQPAACDTCGQT 498
           VRR   S++P +C TCG+T
Sbjct: 227 VRRSHASSRPYSCPTCGKT 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,196,223
Number of Sequences: 59808
Number of extensions: 290461
Number of successful extensions: 1057
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)